Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P06
(860 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.20
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.20
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.20
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.35
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.35
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.35
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.4
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -2
Query: 505 GGPPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPPXXXP 380
G PP + PP G PP PP + G PPP P
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -2
Query: 526 PXFXXXGGGPPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPP 392
P G PP PP G PP PP G PPP
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 470 PPPXGXPPXX*XGKIPPXXKTGXXPP 393
PPP G PP G PP G PP
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPP 266
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -2
Query: 505 GGPPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPPXXXP 380
G PP + PP G PP PP + G PPP P
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -2
Query: 526 PXFXXXGGGPPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPP 392
P G PP PP G PP PP G PPP
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 470 PPPXGXPPXX*XGKIPPXXKTGXXPP 393
PPP G PP G PP G PP
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPP 287
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -2
Query: 505 GGPPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPPXXXP 380
G PP + PP G PP PP + G PPP P
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -2
Query: 526 PXFXXXGGGPPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPP 392
P G PP PP G PP PP G PPP
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 470 PPPXGXPPXX*XGKIPPXXKTGXXPP 393
PPP G PP G PP G PP
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPP 272
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = -2
Query: 547 LXXXTXGPXFXXXGGG-PPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPPXXXP 380
L T GP GG PP PP G PP PP G PPP P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = -2
Query: 547 LXXXTXGPXFXXXGGG-PPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPPXXXP 380
L T GP GG PP PP G PP PP G PPP P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = -2
Query: 547 LXXXTXGPXFXXXGGG-PPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPPXXXP 380
L T GP GG PP PP G PP PP G PPP P
Sbjct: 302 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 472 PPXLXGXPPXXXXEKFPPXXKXGXPPP 392
PP + G PP +F P G PPP
Sbjct: 310 PPGMPGMPPPPPPSRFGPPGMGGMPPP 336
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 472 PPXLXGXPPXXXXEKFPPXXKXGXPPP 392
PP + G PP +F P G PPP
Sbjct: 320 PPGMPGMPPPPPPSRFGPPGMGGMPPP 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,547,155
Number of Sequences: 27780
Number of extensions: 200864
Number of successful extensions: 365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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