Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P06
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15830.1 68414.m01900 expressed protein                             35   0.080
At1g26150.1 68414.m03192 protein kinase family protein similar t...    29   4.0  
At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    28   7.0  

>At1g15830.1 68414.m01900 expressed protein
          Length = 483

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
 Frame = +3

Query: 354 SPXKVKKKXGXXXGGGXPXFXXGGNFSXLXXGGXPXRXGGXKXFXXXGGPPPXXXKXGPX 533
           +P  ++   G     G P    GG    +  G  P + GG       G PPP     G  
Sbjct: 122 APPPIRGGGGEPAIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEP 181

Query: 534 VXXXXXFXXFKKKKKGGXXKXLAPXXXPP--GGGXPP 638
           V            K+GG  + + P   PP  GGG  P
Sbjct: 182 V-----IPGAPPPKRGGGGEPVIPGAPPPKRGGGGEP 213



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 24/82 (29%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
 Frame = +3

Query: 399 GXPXFXXGGNFSXLXXGGXPXRXGGXKXFXXXGGPPPXXXKXGPXVXXXXXFXXFKKKKK 578
           G P    GG       G  P + GG       G PPP     G  V            K+
Sbjct: 121 GAPPPIRGGGGEPAIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPV-----IPGAPPPKR 175

Query: 579 GGXXKXLAPXXXPP--GGGXPP 638
           GG  + + P   PP  GGG  P
Sbjct: 176 GGGGEPVIPGAPPPKRGGGGEP 197


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = -2

Query: 502 GPPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPPXXXP 380
           GPP       PP     PP    E  PP      PPP   P
Sbjct: 84  GPPPTTIPVSPPPEPSPPPPLPTEAPPPANPVSSPPPESSP 124


>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -2

Query: 508 GGGPPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPP 392
           G  PP       PP   G PP       PP    G PPP
Sbjct: 308 GPRPPQNYGGTPPPNYGGAPPANNMGGAPPPNYGGGPPP 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,702,844
Number of Sequences: 28952
Number of extensions: 175214
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)