Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P05
         (895 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.6  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   7.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 181  EDFRQAVSFGRHGVINFAKSVASDA 107
            +DF+     GRH ++   ++V +DA
Sbjct: 1743 DDFKNRCGEGRHPLLTTIRNVLADA 1767


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 629 EDNPRFREQQLAGNLSGXWLLP 694
           E +P F +QQ   +  G W LP
Sbjct: 217 EYSPTFTQQQTQYSQYGSWFLP 238


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 680 SLKDFPPVAVREIVDCLRQITVAVKQILELVFD 582
           S+++  P   R +VD  R  T+ VKQ  + V D
Sbjct: 21  SIENGYPARRRSLVDDARFETLVVKQTKQSVLD 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,456
Number of Sequences: 336
Number of extensions: 3829
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)