BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fdpeP01_F_P05 (895 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 28 2.1 SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 27 2.7 SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 27 2.7 SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 27 2.7 SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 27 2.7 SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 27 3.6 SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 6.3 SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 26 6.3 SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch... 26 8.3 >SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 1822 Score = 27.9 bits (59), Expect = 2.1 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = -1 Query: 406 SPTSVTEHFRSRRVLSYNRLKFKTTQFLRPLTVVSLKSMCKPAWTVFT 263 SP +V+E + VLS +R+ +T+ V K++C+ +W T Sbjct: 1134 SPEAVSELMSTEVVLSIDRIFTQTSSLSGSAIVSFFKALCEVSWDEIT 1181 >SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr 3|||Manual Length = 393 Score = 27.5 bits (58), Expect = 2.7 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = -1 Query: 364 LSYNRLKFKTTQFLRPLTVVSLKSMCKPAWTVFTRPTVIGSMVSIPRSAIPAARNGTAF 188 L+ N+ +T + + ++ + S+C P WT F R + V + +S I NGT F Sbjct: 258 LNLNKALIYSTCTISAVLLLIVSSVCIPFWT-FERTLAKLAKVFLLQSGIVLVLNGTMF 315 >SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosaccharomyces pombe|chr 1|||Manual Length = 618 Score = 27.5 bits (58), Expect = 2.7 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +3 Query: 522 EGDRYWHVSDWKHSAEDVSKVEYQFQNLFNGN 617 EGD +W + DW +D + E + FNGN Sbjct: 77 EGD-HWLMPDWSSMPDDETITEDSEEETFNGN 107 >SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr 3|||Manual Length = 368 Score = 27.5 bits (58), Expect = 2.7 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = -1 Query: 364 LSYNRLKFKTTQFLRPLTVVSLKSMCKPAWTVFTRPTVIGSMVSIPRSAIPAARNGTAF 188 L+ N+ +T + + ++ + S+C P WT F R + V + +S I NGT F Sbjct: 225 LNLNKALIYSTCTISAVLLLIVSSVCIPFWT-FERTLAKLAKVFLLQSGIVLVLNGTMF 282 >SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schizosaccharomyces pombe|chr 3|||Manual Length = 289 Score = 27.5 bits (58), Expect = 2.7 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -1 Query: 622 SRLPLNKFWNWYSTLETSSALCFQSLTCQYLSPSTILSSTSRIIFIMMSRILI 464 S L+ +WNWY T++ CF + S + S IIF+MM+ L+ Sbjct: 116 SSCKLSMYWNWY-TIDA----CFITKHWHITSKHMFVGSIFGIIFMMMALELV 163 >SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase Alg10|Schizosaccharomyces pombe|chr 1|||Manual Length = 445 Score = 27.1 bits (57), Expect = 3.6 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = -2 Query: 513 SPPRLELSSL*CPGF*SCT---FRCLRWVVSVVGHPTCIHQPVS 391 +PP L L S+ F C+ R + W+V V+G P I+ VS Sbjct: 57 TPPGLYLVSVALSPFIGCSNVSLRLINWLVGVIGLPWLINDIVS 100 >SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1372 Score = 26.2 bits (55), Expect = 6.3 Identities = 8/33 (24%), Positives = 18/33 (54%) Frame = +2 Query: 668 NLSGXWLLPWXKAIVSKIIHETFKLFDKVPIKD 766 N+ WL W + ++ K++ E K+ ++ + D Sbjct: 322 NVFDLWLSQWKRTLLEKVVTEEKKVLEEAALHD 354 >SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 244 Score = 26.2 bits (55), Expect = 6.3 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 555 KHSAEDVSKVEYQFQNLFNGNRDLAKTIHDF 647 K E + K FQ LF RD+ KTI++F Sbjct: 19 KAEIEILKKQNELFQPLFEQRRDILKTINNF 49 >SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 77 Score = 25.8 bits (54), Expect = 8.3 Identities = 14/52 (26%), Positives = 21/52 (40%) Frame = +3 Query: 504 VEERIVEGDRYWHVSDWKHSAEDVSKVEYQFQNLFNGNRDLAKTIHDFANSN 659 VEE + D YW DW+ E + +F+ + +I D N N Sbjct: 28 VEEHLRLNDCYWDTHDWRKCTEQME----EFRKCWEKRHGPLPSISDKKNKN 75 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,476,173 Number of Sequences: 5004 Number of extensions: 68175 Number of successful extensions: 183 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 176 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 183 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 450492750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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