Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P05
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0442 + 20837492-20837621,20841842-20842075,20842435-208425...    30   2.9  
06_01_1118 - 9213785-9215051,9215811-9215992,9216075-9216611,921...    29   3.8  
03_01_0167 + 1374578-1375243,1375895-1376277,1377947-1378007,137...    29   5.0  
02_05_1090 - 34027737-34028582                                         29   6.6  
10_08_0256 + 16252773-16253005,16253309-16253396,16253525-162535...    28   8.7  

>06_03_0442 +
           20837492-20837621,20841842-20842075,20842435-20842528,
           20842653-20842870,20842956-20843095,20843231-20843878
          Length = 487

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -1

Query: 505 TSRIIFIMMSRILILYFP-----VPSMGSISSWPPNVYSPTSVTEHFRSRRVLSY 356
           T R  F+++S +L +  P     +  +G++  WP  VY P  V  + R RR+  Y
Sbjct: 392 TWRTAFVVVSTVLAIVMPFFNDILGFLGAVGFWPLTVYYP--VEMYIRQRRIQRY 444


>06_01_1118 -
           9213785-9215051,9215811-9215992,9216075-9216611,
           9216742-9217224
          Length = 822

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 562 LCFQSLTCQYLSPSTILSSTSRIIFIMMSRILILYFPVPSMGS 434
           LC   +  QY +P  ++ + S ++F+++  +   YFP P+  S
Sbjct: 7   LCNFRVKKQYYNPRCLIPAVSLLLFVVILTVSNTYFPFPTTKS 49


>03_01_0167 +
           1374578-1375243,1375895-1376277,1377947-1378007,
           1378721-1379386
          Length = 591

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 287 QASLDGVHPAHGHRIHG--FNTEI-GD--SRCEKRYRLLR*GLQTSR 162
           Q + D +HP HGH + G  F   + GD  S  ++RYR L  G    R
Sbjct: 541 QMAPDAMHPGHGHHVVGGQFGVAMDGDAASHAQERYRSLSAGFHLLR 587


>02_05_1090 - 34027737-34028582
          Length = 281

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 190 FCAEDFRQAVSFGRHGVINFAKS 122
           FC+ED+   V F + G++N  +S
Sbjct: 136 FCSEDYPSEVGFSQEGIVNLVQS 158


>10_08_0256 +
           16252773-16253005,16253309-16253396,16253525-16253548,
           16253662-16253730,16253834-16254056,16254147-16254252,
           16254303-16254570
          Length = 336

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 232 IPRSAIPAARNGTAFCAEDFRQAVSFGRHGVINFAKSVASDATNAHANKKTKNQHRK 62
           +P  A PA+         D    +  G   V+N   + ASDA++A + KK  N  RK
Sbjct: 152 LPEKAPPASETAQQQQGSDRAAQIKDG--DVVNPEPAAASDASHAASTKKLSNASRK 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,058,411
Number of Sequences: 37544
Number of extensions: 468436
Number of successful extensions: 1213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)