Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P05
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032642-3|CAA21654.1|  336|Caenorhabditis elegans Hypothetical ...    30   2.6  
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL032642-3|CAA21654.1|  336|Caenorhabditis elegans Hypothetical
           protein Y48A6C.4 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 763 LDRHLIEQFECFVNYLGDDSLXPWEEP 683
           L R+  + F CF+NYLG      W +P
Sbjct: 179 LCRNHADLFPCFINYLGSSKRLAWNKP 205


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = -1

Query: 244 SMVSIPRSAIPAARNGTAFCAEDFRQAVSFGRHGVINFAKSVASDATNAHANKKTKNQHR 65
           S +  P + +    N      ED  Q VS G  GV   A S +   TN H   + + Q +
Sbjct: 505 STIIAPMTTLEVQTNSLVGRLEDL-QEVSPGGAGVN--ASSDSQSITNNHTTPRPEKQKK 561

Query: 64  KLFTKQ 47
           K FTK+
Sbjct: 562 KKFTKR 567


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 595 SRICLTATVIWRRQSTISRTATGGKSFRXVAPPMXQGYRLQDNSRNIQTVR*GAYQ 762
           S +C T   ++ R+ T+     G K +R V PP    Y L +N      ++ G+Y+
Sbjct: 351 SDVCRTIHFVFDREVTVK----GFKGYRFVMPPTQFDYSLDENCGYCIPLKYGSYE 402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,285,057
Number of Sequences: 27780
Number of extensions: 388756
Number of successful extensions: 1021
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)