Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P05
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein si...    30   1.8  
At2g41770.1 68415.m05163 expressed protein contains Pfam domain ...    30   1.8  
At3g15190.1 68416.m01920 chloroplast 30S ribosomal protein S20, ...    29   3.1  
At3g14410.1 68416.m01823 transporter-related low similarity to S...    29   5.5  
At4g04370.1 68417.m00624 pentatricopeptide (PPR) repeat-containi...    28   7.3  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    28   7.3  
At5g13830.1 68418.m01617 FtsJ-like methyltransferase family prot...    28   9.6  
At5g02890.1 68418.m00232 transferase family protein contains Pfa...    28   9.6  
At1g03830.1 68414.m00364 guanylate-binding family protein contai...    28   9.6  

>At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 554

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 312 RSCL*NPCASQPGRCSPGPRSSDPWFQYRDRRFPLR 205
           RS L    +S P  CS  PR   PW + R R+ PLR
Sbjct: 36  RSALFVVASSSPASCSDRPRLKSPWSR-RKRKRPLR 70


>At2g41770.1 68415.m05163 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 771

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -1

Query: 634 VFAKSRLPLNKFWNWYSTLETSSALCFQSLTCQYL 530
           VF+   + +  F+  Y+T +T+S LCFQS + Q+L
Sbjct: 53  VFSLLIVTIVAFFFLYNTTDTASLLCFQSQSTQFL 87


>At3g15190.1 68416.m01920 chloroplast 30S ribosomal protein S20,
           putative contains Pfam profile: PF01649 ribosomal
           protein S20
          Length = 202

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 822 MTLR*MSCFQP*RYYSNARSLIGTLSNSLNVS*IILETIALXHG 691
           ++L+ +SC  P   +SN R    TLS+SL+ S  + + +A   G
Sbjct: 21  LSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTG 64


>At3g14410.1 68416.m01823 transporter-related low similarity to
           SP|Q96A29 GDP-fucose transporter 1 {Homo sapiens},
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275; contains 10
           predicted transmembrane domains;
          Length = 340

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 640 WIVFAKSRLPLNKFWNWYSTLETSSALCFQSLTCQYLSPSTILSSTSRI 494
           WI   KS++  N  WN++  + T ++LC  +L    LS   ++S TS +
Sbjct: 215 WIFLEKSKIDGNGPWNFHFVVLTLNSLCTFALN---LSVFLVISHTSAL 260


>At4g04370.1 68417.m00624 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 729

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 373 RRVLSYNRLKFKTTQFLRPLTVVSLKSMCKPA 278
           + +L +  +KFKT Q +   TVVSL   C  A
Sbjct: 430 KALLLFEEMKFKTVQQVDSFTVVSLLQACSSA 461


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 601 FWNWYSTLETSSALCFQSLTCQYLSPST 518
           F+  Y+T +T+S LCFQS + Q L   T
Sbjct: 57  FFFLYNTTDTASLLCFQSQSTQSLQSLT 84


>At5g13830.1 68418.m01617 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 224

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 248 DDRGPGEHRPGWLAHG 295
           DD GP E RPG L HG
Sbjct: 159 DDGGPNESRPGVLRHG 174


>At5g02890.1 68418.m00232 transferase family protein contains Pfam
           profile PF02458: Transferase family
          Length = 353

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 610 LNKFWNWYSTLETSSALCFQSLTCQYLSPSTILSS--TSRIIFIMM 479
           L +F+   S L+    + F++ TC  +SP+ I++S  TS  +F+ +
Sbjct: 217 LTEFFRSASVLDRGEPIAFRAKTCLKISPACIVTSKRTSGDVFLFI 262


>At1g03830.1 68414.m00364 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 991

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 552 WKHSAEDVSKVEYQFQNLFNGNRDLAKTIHDFANSNWREI 671
           ++ + +D+ K+  QF+N  N      K+IHD  +SN  E+
Sbjct: 439 YESAIDDICKLSDQFKNRINDLESKCKSIHD-EHSNLMEV 477


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,283,677
Number of Sequences: 28952
Number of extensions: 364987
Number of successful extensions: 961
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)