Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P04
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...   110   2e-25
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    30   0.39 
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    29   0.90 
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    23   9.9  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score =  110 bits (265), Expect = 2e-25
 Identities = 53/84 (63%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
 Frame = +2

Query: 215 SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 391
           +IQN NT DPFAD   + +DD Q    +H+RIQQRNGRKTLTTVQGL  E+D K+I+RA 
Sbjct: 3   AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRAL 59

Query: 392 KKEFACNGTVVEHPEYGEVLQLQG 463
           KK+FACNGT+V+  + GEV+QLQG
Sbjct: 60  KKDFACNGTIVKDDDLGEVIQLQG 83


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 293 VHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQG 463
           V ++  +R  RK +TTVQGL +   + KK  +    +FA   +V +  +  + + +QG
Sbjct: 99  VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQG 156


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 274 VLRAFDSIGEWVECVEILDGHTIERRVSLFQRNAAILRNS 155
           +LR   S+  W+  ++  +G T+E+RV LF+R  + L  S
Sbjct: 25  LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFERACSELPGS 64


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 23.0 bits (47), Expect(2) = 9.9
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 358 RGKALHRSQRLTPVSLLDTDVD*TILNVVLRAFDSIGEWVECVEILDGHTIERRVSLFQ 182
           R   LH    L+   LL      +IL +   A+DS+G + E V     H+I   V L +
Sbjct: 91  RNFILHCHHELSSGELLRNSALYSILYIAAGAYDSVGSFEEHV-----HSISENVYLLR 144



 Score = 20.6 bits (41), Expect(2) = 9.9
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 496 VSHWQIFSRWSXLKL 452
           V HW +   WS + L
Sbjct: 73  VRHWSLKQNWSSMSL 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,570,839
Number of Sequences: 5004
Number of extensions: 71637
Number of successful extensions: 186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)