Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P04
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 100 2e-21
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 97 2e-20
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 94 1e-19
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 84 1e-16
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513... 29 5.0
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499... 29 6.6
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751... 28 8.8
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 100 bits (239), Expect = 2e-21
Identities = 50/87 (57%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Frame = +2
Query: 212 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 382
+ +Q + FDPFA+A + + V G VHVRIQQRNGRK+LTTVQGL EY KI+
Sbjct: 4 LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKIL 62
Query: 383 RACKKEFACNGTVVEHPEYGEVLQLQG 463
+ KKEF CNGTVV+ PE G+V+QLQG
Sbjct: 63 KDLKKEFCCNGTVVQDPELGQVIQLQG 89
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 97.1 bits (231), Expect = 2e-20
Identities = 49/87 (56%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
Frame = +2
Query: 212 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 382
+ IQ FDPFA+A + + G VHVRIQQRNGRK+LTTVQGL E+ KI+
Sbjct: 729 LDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 787
Query: 383 RACKKEFACNGTVVEHPEYGEVLQLQG 463
+ KKEF CNGTVV+ PE G+V+QLQG
Sbjct: 788 KDLKKEFCCNGTVVQDPELGQVIQLQG 814
Score = 37.5 bits (83), Expect = 0.014
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = +3
Query: 465 DQRENICQWLTKSGLVKPEQLKVHGF 542
DQR+N+ +L ++G+VK E +K+HGF
Sbjct: 815 DQRKNVSNFLVQAGIVKKEHIKIHGF 840
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 94.3 bits (224), Expect = 1e-19
Identities = 47/78 (60%), Positives = 56/78 (71%), Gaps = 3/78 (3%)
Frame = +2
Query: 239 DPFADAIKSSEDDVQDGL---VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 409
DPFA+A + + G VHVRIQQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 3 DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCC 61
Query: 410 NGTVVEHPEYGEVLQLQG 463
NGTVV+ PE G+V+QLQG
Sbjct: 62 NGTVVQDPELGQVIQLQG 79
Score = 34.7 bits (76), Expect = 0.10
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 465 DQRENICQWLTKSGLVKPEQLKVHGF 542
DQR+N+ +L ++G+ K + +K+HGF
Sbjct: 80 DQRKNVATFLVQAGIAKKDNIKIHGF 105
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/57 (63%), Positives = 45/57 (78%)
Frame = +2
Query: 293 VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQG 463
VHVR+QQRNGRKTLTTVQG+ EY+ K++R K+E CNG VVE E G+++QLQG
Sbjct: 498 VHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCCNGNVVEDKELGKIIQLQG 554
Score = 33.1 bits (72), Expect = 0.31
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 432 RSTARCCSFRXDQRENICQWLTKSGLVKPEQLKVHGF 542
+ + + D R ++ +L K+G+V+ + +KVHGF
Sbjct: 544 KELGKIIQLQGDHRNSVSDFLAKAGMVRKDNIKVHGF 580
>01_01_0671 -
5137787-5137843,5138420-5138503,5138595-5138662,
5138854-5138935,5139282-5139346,5139504-5139747
Length = 199
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 314 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQG 463
RN RK +T V+GL L + K+FA +VV+ P E + +QG
Sbjct: 115 RNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQG 165
>01_06_1413 +
37149038-37149295,37149392-37149603,37149687-37149951,
37150099-37150407
Length = 347
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 163 VVSQRFVETKRPYVQSYVHPESQHI 237
V +QR+V K P+V+ + HPE H+
Sbjct: 299 VEAQRYVAEKLPWVRYHEHPEGGHL 323
>11_02_0028 +
7517196-7517206,7517256-7517312,7517423-7517503,
7518009-7518108,7518454-7518507,7519045-7519115,
7519248-7519455,7519647-7519700,7519934-7520025,
7520090-7520285,7521158-7521339,7521429-7521496,
7522848-7522920,7523010-7523071,7523155-7524079,
7524843-7525133,7525601-7525871
Length = 931
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = -2
Query: 436 LRVLHD-RTVARELLLACPHDL 374
LR+LHD + VAR++L A PHDL
Sbjct: 564 LRMLHDGKWVARKVLGAVPHDL 585
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,067,140
Number of Sequences: 37544
Number of extensions: 466500
Number of successful extensions: 1130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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