Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P04
         (896 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   1e-25
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)          29   6.7  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           28   8.9  

>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score =  113 bits (273), Expect = 1e-25
 Identities = 53/77 (68%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
 Frame = +2

Query: 242 PFADAIKS---SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 412
           PF DA K    S   VQ  ++HVRIQQRNGRKTLTT+QG+S EYD KK+V+A KK+FACN
Sbjct: 482 PFEDASKGDGESNTSVQRDVIHVRIQQRNGRKTLTTIQGISDEYDKKKLVKAFKKQFACN 541

Query: 413 GTVVEHPEYGEVLQLQG 463
           GTVV+HPEYGE +QLQG
Sbjct: 542 GTVVDHPEYGECIQLQG 558



 Score = 32.3 bits (70), Expect = 0.55
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 447 CCSFRXDQRENICQWLTKSGLVKPEQLKVHGF 542
           C   + DQR +  ++L +  L K +Q+KVHGF
Sbjct: 553 CIQLQGDQRAHAQEFLLQIDLAKKDQIKVHGF 584


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +2

Query: 149 YC*VA*YRSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSED-----DVQDGLVHVRIQQ 313
           YC V    ++ L   D ++  M+ +    F   +DAI S  D     D QDG  +  +  
Sbjct: 51  YCVVMLGIALDLAVYDSSYEDMASKFFEHFTQISDAINSMRDGSGLWDEQDGFYYDHLMS 110

Query: 314 RNGRKTL 334
           R+G K L
Sbjct: 111 RDGSKPL 117


>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 181 VETKRPYVQSYVHPESQ---HIRPIRRCYQKLGGRRSRWFSPRPYPATKRA*DADYGARP 351
           VE +   V+  +  ES    +IR   RC+Q    +R+  F  RP+P T+   D     RP
Sbjct: 49  VEVREDEVKERIRAESLANVNIRWHGRCHQSNTSKRNLSFVKRPFPTTQAENDEPEPRRP 108


>SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)
          Length = 1052

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 146 LYC*VA*YRSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSED 274
           LYC V    S+ L   DPT+  M+++    F   ADA+    D
Sbjct: 682 LYCIVMLNISLELALADPTYEDMALKFFEHFTHIADAMNKMSD 724


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 809  KLLGIFTISFD*LFCNL*DETAAIIYKIYNILYNRG 702
            K L + T+ F+ LFC    ET A++ + +N+ +  G
Sbjct: 1169 KALRMATLQFNSLFCIANQETLAVLAQFFNVAFPSG 1204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,350,624
Number of Sequences: 59808
Number of extensions: 564900
Number of successful extensions: 2770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2770
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)