Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P04
(896 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 99 5e-21
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 97 2e-20
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 96 2e-20
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 92 4e-19
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 92 4e-19
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera... 34 0.15
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa... 30 1.8
At2g15345.1 68415.m01755 expressed protein 30 2.4
At5g11900.1 68418.m01392 eukaryotic translation initiation facto... 29 4.2
At2g35030.1 68415.m04297 pentatricopeptide (PPR) repeat-containi... 29 4.2
At3g53130.1 68416.m05855 cytochrome P450 family protein similar ... 28 9.7
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 98.7 bits (235), Expect = 5e-21
Identities = 46/84 (54%), Positives = 56/84 (66%)
Frame = +2
Query: 212 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 391
+ +Q FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++
Sbjct: 4 LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDL 63
Query: 392 KKEFACNGTVVEHPEYGEVLQLQG 463
KKEF CNGTVV+ E G+V+QLQG
Sbjct: 64 KKEFCCNGTVVQDSELGQVIQLQG 87
Score = 36.7 bits (81), Expect = 0.021
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = +3
Query: 465 DQRENICQWLTKSGLVKPEQLKVHGF 542
DQR+N+ +L ++GLVK + +K+HGF
Sbjct: 88 DQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 96.7 bits (230), Expect = 2e-20
Identities = 45/76 (59%), Positives = 53/76 (69%)
Frame = +2
Query: 236 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 415
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 416 TVVEHPEYGEVLQLQG 463
TVV+ E G+V+QLQG
Sbjct: 72 TVVQDSELGQVIQLQG 87
Score = 36.7 bits (81), Expect = 0.021
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = +3
Query: 465 DQRENICQWLTKSGLVKPEQLKVHGF 542
DQR+N+ +L ++GLVK + +K+HGF
Sbjct: 88 DQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/76 (59%), Positives = 53/76 (69%)
Frame = +2
Query: 236 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 415
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 416 TVVEHPEYGEVLQLQG 463
TVV+ E G+V+QLQG
Sbjct: 72 TVVQDSELGQVIQLQG 87
Score = 36.7 bits (81), Expect = 0.021
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = +3
Query: 465 DQRENICQWLTKSGLVKPEQLKVHGF 542
DQR+N+ +L ++GLVK + +K+HGF
Sbjct: 88 DQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 92.3 bits (219), Expect = 4e-19
Identities = 41/84 (48%), Positives = 60/84 (71%)
Frame = +2
Query: 212 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 391
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 392 KKEFACNGTVVEHPEYGEVLQLQG 463
KK+F CNG VV+ E G+++QLQG
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQG 86
Score = 36.7 bits (81), Expect = 0.021
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 432 RSTARCCSFRXDQRENICQWLTKSGLVKPEQLKVHGF 542
+ + + DQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 76 KELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 92.3 bits (219), Expect = 4e-19
Identities = 41/84 (48%), Positives = 60/84 (71%)
Frame = +2
Query: 212 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 391
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 392 KKEFACNGTVVEHPEYGEVLQLQG 463
KK+F CNG VV+ E G+++QLQG
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQG 86
Score = 36.7 bits (81), Expect = 0.021
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 432 RSTARCCSFRXDQRENICQWLTKSGLVKPEQLKVHGF 542
+ + + DQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 76 KELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +2
Query: 176 VSLKQRDPTFNRMSIQNLN--TF-DPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 337
+S+ R N +++NL+ TF D F D + S+ DDVQ+ LVH +RNG K L+
Sbjct: 41 LSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVHF---ERNGDKALS 94
>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
profile PF01554: MatE Uncharacterized membrane protein
family
Length = 502
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -3
Query: 429 CSTTVP-LHANSFLHARTIFFRSYSEERP---CTVVSVL 325
CS ++P L ANSFLH I+ R P CT+VSVL
Sbjct: 150 CSFSLPDLLANSFLHPLRIYLRCKGTTWPLMWCTLVSVL 188
>At2g15345.1 68415.m01755 expressed protein
Length = 121
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +2
Query: 287 GLVHVRIQQ--RNGRKTLTTVQGL--SSEYD-LKKIVRACKKEFACNGTVVE 427
GLV++ QQ R G K L ++GL + Y LKK R+C KE+ + +E
Sbjct: 3 GLVNMVYQQTERLGYKNLEMIKGLDRTENYSKLKKYYRSCVKEYELSNKAIE 54
>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
SUI1 family protein similar to SP|O43583
Density-regulated protein (DRP1 protein) (Smooth muscle
cell associated protein-3) {Homo sapiens}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 198
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 314 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQG 463
RN RK +T V+GL L + K+FA +VV+ P E + +QG
Sbjct: 114 RNKRKCITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQG 164
>At2g35030.1 68415.m04297 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 627
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 351 FPRNMT*RRSCGHARRSSRATVRSWSTRSTARCCSFRXDQRENICQWLTKSGLVKP 518
F RN ++CG R V SW+T T + ++ N+ + + G VKP
Sbjct: 274 FIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKP 329
>At3g53130.1 68416.m05855 cytochrome P450 family protein similar to
Cytochrome P450 97B2 (SP:048921) [Glycine max]
Length = 539
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 85 WS*HXLAVCQRAHXSALSVTVILLSCVVSQRFVETKRPYVQ 207
W+ AV H LSV V + C ++R VE +PY +
Sbjct: 165 WTARRRAVVPSLHRRYLSVIVERVFCKCAERLVEKLQPYAE 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,589,241
Number of Sequences: 28952
Number of extensions: 374581
Number of successful extensions: 935
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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