Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P03
         (992 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    28   1.8  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    26   9.5  

>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 79  VKISLIVIFAVVHAAATRL---ACRSDCELCVTCES*MGS*VEVYMILVE 219
           + ISL V+F  +H + T +     RS   LC TC S + + ++ +M +VE
Sbjct: 549 LNISLPVLFDALHISETSIQMTVSRSIHTLCTTCASHLLTEIDGFMAVVE 598


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 15  RLTIGNSLRFGTCRSYFRQKNS*NITYSNFRR 110
           RL+  N L F TC S++  K S  +   +FRR
Sbjct: 9   RLSSKNLLSFKTCYSFYSTKASSPLPQPSFRR 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,563
Number of Sequences: 5004
Number of extensions: 28837
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)