Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P03
         (992 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0027 + 27140626-27141457,27143101-27143901,27144838-271448...    30   3.3  
05_03_0343 + 12732673-12732792,12732903-12733091,12733220-127333...    30   3.3  
01_01_1219 + 9858375-9858483,9859184-9859506                           29   4.4  

>05_07_0027 +
           27140626-27141457,27143101-27143901,27144838-27144873,
           27145133-27145420,27145836-27146289,27146520-27146964
          Length = 951

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 249 AHLSRRHGSTFDENHVDFHSTAHSRF-----TCNTQFTVRPTR*SSCSCVNNGENYYK*Y 85
           A L R H +T DE+   F  T   +F      C+  F+  P      SCV+ G +YY+ +
Sbjct: 394 ACLDRYHNTTIDESK--FMYTDRDQFLTVYVNCSANFSSLPLIYDLVSCVSGGSSYYRLH 451

Query: 84  FN 79
            N
Sbjct: 452 KN 453


>05_03_0343 +
           12732673-12732792,12732903-12733091,12733220-12733387,
           12733468-12733522,12733646-12733704,12734784-12734909,
           12737281-12737409,12737486-12737540,12737633-12737808,
           12737903-12737986,12738602-12738625
          Length = 394

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 266 GFLSGTLISADAMAQPSTRIM*TSTQLPIHDSHVTHSSQSDRHAS 132
           G +SGT+  + A   PS       T  P+HD +V + + S+ +A+
Sbjct: 50  GAISGTIDRSKAAPAPSAGTPGAGTTPPVHDLNVPYEATSEEYAT 94


>01_01_1219 + 9858375-9858483,9859184-9859506
          Length = 143

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 313 VTFLXAAXRSNP-TRA-PASCRARSSQQTPWLNLRRESCRLPLNCPFTIHM*HTVHSPTD 140
           V+FL ++  S P  RA PAS    S+   P L  +  S + PLN  FT     +VH+  +
Sbjct: 9   VSFLASSSASPPRARALPASANVASTIPAPRLQCKNLSSQSPLNASFTKKRLVSVHASAE 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,846,760
Number of Sequences: 37544
Number of extensions: 233582
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2905255520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)