Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P02
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.37 
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    29   0.65 
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   3.5  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   3.5  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.6  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.1  
SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    26   6.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 456 TAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLP-PDVTTSST 310
           T+    +ST  PP   SS+++  +T  P++   ST S+ +P P  +TSST
Sbjct: 111 TSTSCTTSTSIPPTGGSSSLSTPIT--PTVPPTSTSSTSIPIPPTSTSST 158



 Score = 30.3 bits (65), Expect = 0.37
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 456 TAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLP-PDVTTSST 310
           T+    +ST  PP   SS+++  +T  P++   ST S+ +P P  +TSST
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPIT--PTVPPTSTSSTSIPIPPTSTSST 215



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 441 ASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPP 331
           ++ST  PP S SST T+   + PS     T S+ +PP
Sbjct: 312 STSTPPPPASTSSTGTSSSPL-PSTSTSCTTSTSIPP 347


>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 11/41 (26%), Positives = 27/41 (65%)
 Frame = +2

Query: 296 KRALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLEREQ 418
           K+ L ++DV+T+G ++ E +  L  + + +   V++L+R++
Sbjct: 118 KKVLLLDDVITAGTAIREAISFLEPKHVKLAGIVLLLDRQE 158


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 444 FASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKL 337
           FASSTL  P S S  ++   + K S     ++S KL
Sbjct: 608 FASSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKL 643


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 264 LCGI*FC-FFSLHDHWSVRVD 205
           LC + FC FF +HD+WS R D
Sbjct: 554 LCEL-FCYFFRIHDYWSRRFD 573


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 293 FFSYTPSSNFFVAYNFVSFLFMIIGLSVLMEMTTARGSAAYG 168
           FF ++    FFV+YN++   +  +  S L   T  R SA+ G
Sbjct: 453 FFGFSLLIVFFVSYNYIIDSYQHMAPSALAAATLVRYSASGG 494


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 293 FFSYTPSSNFFVAYNFVSFLFMIIGLSVLMEMTTARGSAAYG 168
           FF ++    FFV+YN++   +  +  S L   T  R +A+ G
Sbjct: 448 FFGWSLLFVFFVSYNYIIDSYQKLAASALAAATLVRYAASGG 489


>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 465 SDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRK 361
           SDFT +     T   P S  ST  A + +  SLRK
Sbjct: 209 SDFTQVDGRIVTGVNPMSAKSTAEAAIKVSQSLRK 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,650
Number of Sequences: 5004
Number of extensions: 55291
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)