Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P02
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867...    80   2e-15
12_02_0962 + 24854731-24854830,24854966-24855076,24855332-248554...    31   0.91 
07_03_0402 - 17734494-17734550,17736775-17736819,17738333-177383...    31   1.2  
05_03_0423 + 13792424-13792564,13792712-13792944,13793681-137937...    30   2.8  
12_02_0945 - 24670970-24671023,24671512-24671570,24671998-246721...    29   3.7  
07_03_1416 - 26415330-26417153                                         28   8.5  

>01_07_0191 +
           41885121-41885909,41886152-41886190,41886701-41886784,
           41887331-41887413,41887501-41887588,41887736-41887990,
           41888275-41888403
          Length = 488

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 38/76 (50%), Positives = 55/76 (72%)
 Frame = +2

Query: 305 LXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLEREQGGASVLEANGIAVKSLFTLTNL 484
           L VED+VT+G S+LETV  LR+ GL+V  AV+V++REQGG   L ANG+A+ SL TLT +
Sbjct: 116 LIVEDLVTTGSSVLETVAPLREVGLVVADAVVVIDREQGGRENLAANGVALHSLMTLTEV 175

Query: 485 VRMLHKAGRIDNDTVE 532
           + +L K G++  +  +
Sbjct: 176 LAVLVKRGKLGEEKAQ 191



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 29/85 (34%), Positives = 47/85 (55%)
 Frame = +1

Query: 52  TPISFXLRVIVSHPXLMVAVSHQLEQLIKXVHHXMICGVPYAALPLAVVISINTDRPMIM 231
           +PI   LR++V+HP L+  V+  L  L     + ++CGVPY ALP+A V+S     PM++
Sbjct: 32  SPIYLDLRMLVAHPRLLSTVASLLGSLPATRPYDLLCGVPYTALPIASVLSAAASVPMLL 91

Query: 232 KRKETKLYATKKLLEGVYEKNQTCL 306
           +R     +A  + L+G +      L
Sbjct: 92  RRYHVTPHAAAECLDGSFRAGDAVL 116


>12_02_0962 +
           24854731-24854830,24854966-24855076,24855332-24855424,
           24855538-24855687,24855934-24855992,24856081-24856134
          Length = 188

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 299 RALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLEREQ 418
           RA+ V+D++ +GG+L   V+ L + G  V     V+E ++
Sbjct: 130 RAIIVDDLIATGGTLCAAVKLLERAGAEVVECACVVELQE 169


>07_03_0402 -
           17734494-17734550,17736775-17736819,17738333-17738391,
           17739128-17739277,17741868-17741960,17742589-17742598
          Length = 137

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 296 KRALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLE 409
           +RAL V+D+V +GG+L   +  L + G  V     V+E
Sbjct: 62  ERALVVDDLVATGGTLCAAIVLLERAGAEVVECACVIE 99


>05_03_0423 +
           13792424-13792564,13792712-13792944,13793681-13793756,
           13794003-13794089,13794500-13794553,13794654-13794695,
           13794818-13794896,13795059-13795129,13795235-13795297
          Length = 281

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 423 PPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTSSTXKARLIFFIYAL 274
           P CS SS+        P LRK  ++S       T+S+  +  L+ F Y+L
Sbjct: 91  PSCSSSSSQDVAPPTLPPLRKALSLSDMADLLTTSSTFSRESLVIFFYSL 140


>12_02_0945 -
           24670970-24671023,24671512-24671570,24671998-24672147,
           24672253-24672345,24672491-24672601,24673158-24673251
          Length = 186

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 299 RALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLE 409
           RA+ V+D++ +GG+L   V+ + + G  V     V+E
Sbjct: 128 RAVVVDDLIATGGTLSAAVKLIERAGAEVVECACVIE 164


>07_03_1416 - 26415330-26417153
          Length = 607

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 443 NGIAVKSLFTLTNLVRMLHKAGRID 517
           +G A   LF  T LV M  KAGR+D
Sbjct: 100 SGFAAADLFVRTALVEMYAKAGRVD 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,716,259
Number of Sequences: 37544
Number of extensions: 340652
Number of successful extensions: 880
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)