Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P02
(874 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0) 88 8e-18
SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81) 34 0.13
SB_50449| Best HMM Match : Drf_DAD (HMM E-Value=0.00043) 32 0.70
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 31 1.2
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 29 5.0
SB_23391| Best HMM Match : 7tm_1 (HMM E-Value=1e-24) 29 5.0
SB_569| Best HMM Match : Big_1 (HMM E-Value=1.1) 29 6.6
SB_19576| Best HMM Match : Somatomedin_B (HMM E-Value=2.7) 28 8.7
SB_3316| Best HMM Match : Keratin_B2 (HMM E-Value=0.32) 28 8.7
>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
Length = 474
Score = 88.2 bits (209), Expect = 8e-18
Identities = 40/87 (45%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Frame = +1
Query: 52 TPISFXLRVIVSHPXLMVAVSHQLEQLIKX--VHHXMICGVPYAALPLAVVISINTDRPM 225
+P+ LRVIVS+P ++ +VS + +++ + +ICGVPY ALP+A +S+N + PM
Sbjct: 32 SPVYIDLRVIVSYPDVLQSVSKLMWKVVSDAGLKFDVICGVPYTALPIASCMSVNNNAPM 91
Query: 226 IMKRKETKLYATKKLLEGVYEKNQTCL 306
+M+RKE K Y TKKL+EG +E+ TCL
Sbjct: 92 VMRRKEAKSYGTKKLIEGHFEEGSTCL 118
Score = 80.6 bits (190), Expect = 2e-15
Identities = 41/111 (36%), Positives = 66/111 (59%)
Frame = +2
Query: 233 REKKQNYMPQRNYWRAYMKKIKRALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLER 412
R K+ + + ++ L +ED+VTSG S+LETVE+L L VT V++L+R
Sbjct: 94 RRKEAKSYGTKKLIEGHFEEGSTCLVIEDIVTSGSSVLETVESLTSVKLQVTDTVVLLDR 153
Query: 413 EQGGASVLEANGIAVKSLFTLTNLVRMLHKAGRIDNDTVELIFDHIKECQF 565
QGG L+ GI + SLFTL ++++LH G++D+ VE + + ++ QF
Sbjct: 154 CQGGKDKLDCAGIRLHSLFTLPRVLKVLHAQGKVDDAVVESVREFLEANQF 204
>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
Length = 468
Score = 34.3 bits (75), Expect = 0.13
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTSST 310
T +V V S T + SS++ + SS +T VT+ S+ V TVSS + VT SS+
Sbjct: 392 TCVVTVSSSVTWVVTVSSSVTWVVTVSSNVTRVVTVSSSVTWVVTVSSSVTSVVTVSSS 450
Score = 33.5 bits (73), Expect = 0.23
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTS 316
T +V V S T + SS++ + SS++T VT+ S+ V TVSS + VT S
Sbjct: 202 TWVVTVSSSVTLVVTVSSSVTWVVTVSSSVTWVVTVSSSVTSVVTVSSSVTRVVTVS 258
Score = 33.5 bits (73), Expect = 0.23
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTSST 310
T +V V S T + SS++ + SS++T VT+ ++ +V TVSS + VT SS+
Sbjct: 382 TWVVTVCSSVTCVVTVSSSVTWVVTVSSSVTWVVTVSSNVTRVVTVSSSVTWVVTVSSS 440
Score = 33.1 bits (72), Expect = 0.30
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTSST 310
T +V V S T + SS++ + SS++T VT+ S+ V TVSS + VT SS+
Sbjct: 192 TWVVTVCSSVTWVVTVSSSVTLVVTVSSSVTWVVTVSSSVTWVVTVSSSVTSVVTVSSS 250
Score = 32.3 bits (70), Expect = 0.53
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTS 316
T +V V S T + SS++ + SS++T+ VT+ S+ +V TVS + VT S
Sbjct: 212 TLVVTVSSSVTWVVTVSSSVTWVVTVSSSVTSVVTVSSSVTRVVTVSFSVTWVVTVS 268
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTSST 310
T +V V S T + S++ + SS++T VT+ S+ V TVSS + VT SS+
Sbjct: 372 TLVVTVSSSVTWVVTVCSSVTCVVTVSSSVTWVVTVSSSVTWVVTVSSNVTRVVTVSSS 430
Score = 31.9 bits (69), Expect = 0.70
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTSST 310
T +V V S T + S++ + SS++T VT+ S+ V TVSS + VT SS+
Sbjct: 182 TLVVTVSSSVTWVVTVCSSVTWVVTVSSSVTLVVTVSSSVTWVVTVSSSVTWVVTVSSS 240
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTS 316
T +V V T + SS++ + SS++T VT+ S+ V TVSS + VT S
Sbjct: 282 TLVVTVSYSVTLVVTVSSSVTWVVTVSSSVTWVVTVSSSVTSVVTVSSSVTWVVTVS 338
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTSST 310
T +V V T + S ++ + SS++T VT+ S+ V TVSS + VT SS+
Sbjct: 272 TWVVTVSYSVTLVVTVSYSVTLVVTVSSSVTWVVTVSSSVTWVVTVSSSVTSVVTVSSS 330
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTS 316
T +V V S T + SS++ + SS++T+ VT+ S+ V TVS + VT S
Sbjct: 292 TLVVTVSSSVTWVVTVSSSVTWVVTVSSSVTSVVTVSSSVTWVVTVSFSVTWVVTVS 348
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKL 337
T +V V S T + SS + + SS++T VT+ S+ V TVSS +
Sbjct: 402 TWVVTVSSSVTWVVTVSSNVTRVVTVSSSVTWVVTVSSSVTSVVTVSSSV 451
Score = 29.1 bits (62), Expect = 5.0
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTS 316
T +V V S T + SS++ + SS++T VT+ S+ V TVS + VT S
Sbjct: 222 TWVVTVSSSVTWVVTVSSSVTSVVTVSSSVTRVVTVSFSVTWVVTVSFNVTWVVTVS 278
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = -2
Query: 480 LVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTS 316
+V + S T++ S ++ + SS++T+ VTI S+ V TVS + VT S
Sbjct: 104 VVTISSSVTSVVKVSFSVTLVVTISSSVTSVVTISSSVTWVVTVSFSVTWVVTVS 158
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = -2
Query: 486 TKLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTSST 310
T +V V S T + SS++ + SS++T VT+ S+ V TVS + VT S+
Sbjct: 302 TWVVTVSSSVTWVVTVSSSVTSVVTVSSSVTWVVTVSFSVTWVVTVSFNVTWVVTVCSS 360
>SB_50449| Best HMM Match : Drf_DAD (HMM E-Value=0.00043)
Length = 801
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 310 C*RCSDIWRQLARNS*NFTQRRFDSYTCRNSTRAGTRWR*CTRSEWYCS 456
C C WR+L R + T DS+TCR + R R W CS
Sbjct: 90 CRNCGK-WRKLRRVEGSLTSELVDSFTCRPTGLGNKRVSESLRCGWLCS 137
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -3
Query: 275 SSNFFVAYNFVSFLFMIIGLSVLMEMTTARGSAAYGT 165
S +FF+ NF++F+F+++ + M T + SAA G+
Sbjct: 1955 SVSFFIGLNFIAFMFILLAY-IAMFWTVRKSSAAVGS 1990
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 29.1 bits (62), Expect = 5.0
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +2
Query: 389 HAVIVLEREQGGASVLE-----ANGIAVKSLFTLTNLVRMLHKAGRIDNDTVELIFDHIK 553
HAV V REQ +S LE AN KSL T+ + LH ID + + I + IK
Sbjct: 360 HAVTVALREQSSSSGLEETSSSANNSPEKSLSPRTSYLSDLH-LPPIDQKSGDEIIEPIK 418
Query: 554 ECQFGTK 574
E G K
Sbjct: 419 EVTEGIK 425
>SB_23391| Best HMM Match : 7tm_1 (HMM E-Value=1e-24)
Length = 540
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -3
Query: 275 SSNFFVAYNFVSFLFMIIGLSVLMEMTTARGSAAYGT 165
S +FF+ NF++F+F+++ + + T + SAA G+
Sbjct: 241 SVSFFIGLNFMAFMFILVAY-IAIFWTVRKSSAAVGS 276
>SB_569| Best HMM Match : Big_1 (HMM E-Value=1.1)
Length = 256
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 477 VNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTSST 310
V +KS STL + ST+ VT++ +L + T+ S L DVT ST
Sbjct: 110 VTLKSTLVRDVTLESTLVRDVTPESTLVRGVTLESTLVRGVTLESTLVRDVTLEST 165
>SB_19576| Best HMM Match : Somatomedin_B (HMM E-Value=2.7)
Length = 149
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 168 SIRCTASCSSHLHQHGQTNDHEEKRNKIICH 260
S+RC A C + Q + HE K +ICH
Sbjct: 38 SLRCPADCLAAQECASQLSRHEVKLVSVICH 68
>SB_3316| Best HMM Match : Keratin_B2 (HMM E-Value=0.32)
Length = 355
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 432 TLAPPCSRSSTITACVTIKPSLRK-VSTVSSKLPP 331
T+ PP RS+ +T C+ PS R + T+ + PP
Sbjct: 159 TITPPSHRSTLVTLCIITPPSHRSTLVTLCTIRPP 193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,504,914
Number of Sequences: 59808
Number of extensions: 403722
Number of successful extensions: 867
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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