Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P02
         (874 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54470.1 68416.m06026 uridine 5'-monophosphate synthase / UMP...    89   4e-18
At4g22570.1 68417.m03257 adenine phosphoribosyltransferase, puta...    31   1.3  
At4g12440.2 68417.m01969 adenine phosphoribosyltransferase, puta...    31   1.3  
At3g13677.1 68416.m01726 expressed protein ; expression supporte...    31   1.3  
At1g80050.1 68414.m09371 adenine phosphoribosyltransferase 2 (AP...    30   1.8  
At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical t...    28   7.1  
At3g25990.1 68416.m03238 DNA-binding protein GT-1-related simila...    28   7.1  
At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P1...    28   7.1  
At4g20240.1 68417.m02957 cytochrome P450, putative similar to |C...    28   9.4  

>At3g54470.1 68416.m06026 uridine 5'-monophosphate synthase / UMP
           synthase (PYRE-F) (UMPS) identical to SP|Q42586 Uridine
           5'-monophosphate synthase (UMP synthase) [Includes:
           Orotate phosphoribosyltransferase (EC 2.4.2.10)
           (OPRtase); Orotidine 5'- phosphate decarboxylase (EC
           4.1.1.23) (OMPdecase)] {Arabidopsis thaliana}
          Length = 476

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 40/86 (46%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +1

Query: 52  TPISFXLRVIVSHPXLMVAVSHQL-EQLIKXVHHXMICGVPYAALPLAVVISINTDRPMI 228
           +P+   LR+IVS+P L+  +S  L   L       ++CGVPY ALP+A V+S++   PM+
Sbjct: 30  SPVYIDLRLIVSYPSLLTQISQTLISSLPPSATFDVVCGVPYTALPIATVVSVSNGIPML 89

Query: 229 MKRKETKLYATKKLLEGVYEKNQTCL 306
           M+RKE K Y T K +EG++EK+QTCL
Sbjct: 90  MRRKEIKDYGTSKAIEGIFEKDQTCL 115



 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 35/77 (45%), Positives = 54/77 (70%)
 Frame = +2

Query: 287 KKIKRALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLEREQGGASVLEANGIAVKSL 466
           +K +  L +ED+VTSG S+LET   LR  GL V+ AV++++R+QGG   L  NGI + S+
Sbjct: 109 EKDQTCLIIEDLVTSGASVLETAAPLRAVGLKVSDAVVLIDRQQGGRENLAENGIKLHSM 168

Query: 467 FTLTNLVRMLHKAGRID 517
             LT++VR+L + G+I+
Sbjct: 169 IMLTDMVRVLKEKGKIE 185


>At4g22570.1 68417.m03257 adenine phosphoribosyltransferase,
           putative strong similarity to Adenine
           phosphoribosyltransferase [Hordeum vulgare subsp.
           vulgare] GI:9711921; contains Pfam profile PF00156:
           Phosphoribosyl transferase domain
          Length = 183

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 299 RALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLE 409
           RAL V+D++ +GG+L   +  L + G  V     V+E
Sbjct: 125 RALVVDDLIATGGTLCAAINLLERVGAEVVECACVIE 161


>At4g12440.2 68417.m01969 adenine phosphoribosyltransferase,
           putative strong similarity to SP|P31166 Adenine
           phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT)
           {Arabidopsis thaliana}; contains Pfam profile PF00156:
           Phosphoribosyl transferase domain
          Length = 182

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 299 RALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLE-REQGGASVLEANGIAV 457
           RAL V+D++ +GG+L   +  L++ G  V     V+E  E  G   LE   + V
Sbjct: 124 RALVVDDLIATGGTLCAAMNLLKRVGAEVIECACVIELPELKGRERLEGKPLYV 177


>At3g13677.1 68416.m01726 expressed protein ; expression supported
           by MPSS
          Length = 171

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = -3

Query: 683 QEKIRRVLVAPSSFQNYKH*PITIN*WIDLISTPNYLSFQ-IGIPLYDQILIRLCHCQFY 507
           QE+I+RV   PS+     H    +N   DL+S  N +S + +GI ++  +L+R+    ++
Sbjct: 25  QEEIKRVCKLPSNSVYAVHRLKVLNKINDLLSVQNIVSREGVGIAIHTALLLRII---YH 81

Query: 506 PLYEAFSL 483
            L++ F L
Sbjct: 82  SLWDEFPL 89


>At1g80050.1 68414.m09371 adenine phosphoribosyltransferase 2 (APT2)
           identical to SP|Q42563 Adenine phosphoribosyltransferase
           2 (EC 2.4.2.7) (APRT) {Arabidopsis thaliana}
          Length = 192

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 284 MKKIKRALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVL 406
           +K  +RAL ++D+V +GG+L  ++  L + G  V     V+
Sbjct: 122 VKSEERALIIDDLVATGGTLSASINLLERAGAEVVECACVV 162


>At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical to
           SP|P42497 Phytochrome D {Arabidopsis thaliana}
          Length = 1164

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 483 KLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVS 355
           K +N++ D+ AI  + + L PP   +   T C+    ++ K++
Sbjct: 783 KFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLT 825


>At3g25990.1 68416.m03238 DNA-binding protein GT-1-related similar
           to GT-1 GI:598073 from [Arabidopsis thaliana]
          Length = 372

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 272 WRAYMKKIKRALXVEDVVTSGGS 340
           WR  +K+ K+A   ED  TSGGS
Sbjct: 107 WRNILKEFKKAKQHEDKATSGGS 129


>At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to
           SP|P14713 Phytochrome B {Arabidopsis thaliana}
          Length = 1172

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 483 KLVNVKSDFTAIPFASSTLAPPCSRSSTITACVTIKPSLRKVS 355
           K +N++ D+ AI  + + L PP   +   T C+    ++ K++
Sbjct: 779 KFINIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNMAMEKLT 821


>At4g20240.1 68417.m02957 cytochrome P450, putative similar to
           |C71R_ARATH Cytochrome P450 71A27 (SP:O65438)
           [Arabidopsis thaliana]
          Length = 865

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 405 STITACVTIKPSLRKVSTVSSKLPP 331
           +T+ A + +KP L++++T   KLPP
Sbjct: 11  TTLLAFLFLKPLLKRITTTKPKLPP 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,033
Number of Sequences: 28952
Number of extensions: 278008
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)