Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P01
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   2.8  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   3.7  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   6.5  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   6.5  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 99  GIRCQKCLEFGHWSYECK 152
           G++C  C + GH S+EC+
Sbjct: 134 GVKCYSCGKIGHRSFECQ 151


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
 Frame = +3

Query: 93  PQGIRCQKCLEFGHWSYEC--------KGKRKILVRPSRTRIMHKNLKAKEEGQCSN 239
           P G  C +C + GHW   C         GK ++       R   KN++   EG  +N
Sbjct: 180 PPGYICYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPAEGDAAN 236


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/43 (30%), Positives = 29/43 (67%)
 Frame = -2

Query: 644 KNYSMKEFEERINKIS*EIRK*ENKNFGSISLLKIRIIQDNNR 516
           K+YS KE+EE+I+ +  E+   E+K    I +L+ +++++ ++
Sbjct: 371 KSYSEKEYEEKISSLRIEL---EDK-LAEIDMLRNKLLKEEHK 409


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 659 DVFRLKNYSMKEFEERINKI 600
           +V RLKN   KE EE++N++
Sbjct: 393 EVNRLKNLKRKELEEKLNQV 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,818
Number of Sequences: 5004
Number of extensions: 41131
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)