Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O24
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...   214   1e-56
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   2.8  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.8  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   4.9  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   6.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   6.5  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   8.5  

>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  214 bits (523), Expect = 1e-56
 Identities = 92/168 (54%), Positives = 136/168 (80%)
 Frame = +2

Query: 206 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 385
           M EAR  ++++LKK+L+AIK+L+T A FDC+DNGI LQAMD+SHV+LVS+ +++DGF+ Y
Sbjct: 1   MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDSSHVALVSMLIKSDGFEPY 60

Query: 386 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 565
           RCDRNI++G+NL ++SK+L+CA ++D VT+KA+D  + +  VFES   +++SDY++KLM+
Sbjct: 61  RCDRNIALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMD 120

Query: 566 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 709
           +D EHLGIP+ EY  TI MP++EF RI RDL    +S+ I+ +KEGV+
Sbjct: 121 IDQEHLGIPDIEYDATITMPAAEFQRITRDLLTLSDSVTINASKEGVR 168



 Score = 34.7 bits (76), Expect = 0.018
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +1

Query: 694 KRRSKVSATGDIGSANVKLAQTASIDKEEXAVVIEM-EXPSL*RLPASTQLFTKATSLSP 870
           K   + S  GDIG+ +  L Q   +  ++ ++ I + +  +L         FTKAT L+ 
Sbjct: 164 KEGVRFSCKGDIGNGSTTLKQHTDLSDQDQSIEISLTQAVTLTFSLKYLAQFTKATPLAT 223

Query: 871 QVXLSXSAXVPLV 909
           +V LS S  VPL+
Sbjct: 224 RVTLSMSNDVPLL 236


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 437 SLTCCLDSCPLRCSYRSGTC 378
           SL+C  DSC + C    GTC
Sbjct: 435 SLSCHSDSCKVSCQNEDGTC 454


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 155 LLLIFNKIIEVIH*NINMFEARLLRSSILKKVLEAIKD 268
           L +  N+ +  IH  I+ +EAR++   IL K+ E +++
Sbjct: 462 LSISLNENVRAIHKLISRYEARIVSPEILTKIQEQVEN 499


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = +2

Query: 317  QAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNAD 496
            + +D+SH  LV     A  F+ YRC +  SMG+  G +  +     D+   ++       
Sbjct: 957  RGLDDSHEQLVDNDDEAAIFETYRCLK--SMGLRRGYVKDMKNPLADQ-RASLDESRETT 1013

Query: 497  NVTFVFESPNQEKVSDYE 550
              +  FES +     D E
Sbjct: 1014 TASSKFESDDSVDTEDEE 1031


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 569 DLEHLGIP-ETEYSCTIRMPSS 631
           +L  +G+P E EY C  R+PSS
Sbjct: 293 ELSRIGLPREFEYDCRTRVPSS 314


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 640  SKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKN 509
            ++F  W +      +  NT + + Q+ +LH++++ F+L    KN
Sbjct: 1032 NEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKN 1075


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 242 KKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVS 352
           K+V  +  D+LTQ T  C D+ +++++       L+S
Sbjct: 436 KEVPSSFTDILTQKTIPCKDHKLKIKSKSGLPKILIS 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,772
Number of Sequences: 5004
Number of extensions: 65346
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)