Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O24
         (911 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)                     184   7e-47
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)                        34   0.14 
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.56 
SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08)          32   0.56 
SB_17643| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00047)         31   1.7  
SB_50445| Best HMM Match : PT (HMM E-Value=2)                          29   5.2  
SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92)                   29   5.2  
SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06)                  29   6.9  
SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33)            29   6.9  
SB_5863| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  

>SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)
          Length = 225

 Score =  184 bits (449), Expect = 7e-47
 Identities = 80/128 (62%), Positives = 103/128 (80%)
 Frame = +2

Query: 323 MDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNV 502
           MD+SHV LVS+ L ADGFD YRCDR +S+GM    +SKI+KCAG++D +TI A+D  D V
Sbjct: 1   MDSSHVCLVSVQLNADGFDPYRCDRTLSIGMKTSLLSKIIKCAGNEDRITIHAEDTGDTV 60

Query: 503 TFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMV 682
           TF FESPN+EK S+Y+MKLM++D EHLGIP+  Y   I+MPS+EF RICRDLSQ G+S+ 
Sbjct: 61  TFSFESPNEEKTSEYKMKLMDIDSEHLGIPDQTYDAVIKMPSAEFQRICRDLSQMGDSVQ 120

Query: 683 ISCTKEGV 706
           I+CTK+G+
Sbjct: 121 IACTKDGI 128



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 712 SATGDIGSANVKLAQTASIDKEEXAVVIEM-EXPSL*RLPASTQLFTKATSLSPQVXLSX 888
           + +G+ GS  V L Q AS+DKE   + IE+ E  +L         F+KAT LS  V LS 
Sbjct: 131 TVSGESGSGKVHLKQNASVDKESEEISIELNEAVNLTFALRYMNFFSKATPLSSSVTLSL 190

Query: 889 SAXVPLV 909
              +PLV
Sbjct: 191 KKDIPLV 197


>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1623

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
 Frame = +2

Query: 185 VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 364
           +IH NIN  + +L    +L K L +    LT+   D      QL A++  H+        
Sbjct: 220 LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 278

Query: 365 ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 538
             G   Y   +  S  + L    K+L      + + I A  N +NV FV  + SPN    
Sbjct: 279 GGGLMAYFSSKMASRKVKLPKQYKLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 331

Query: 539 SDYEMKL 559
           +DY  KL
Sbjct: 332 TDYYRKL 338


>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
 Frame = +2

Query: 185  VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 364
            +IH NIN  + +L    +L K L +    LT+   D      QL A++  H+        
Sbjct: 868  LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 926

Query: 365  ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 538
              G   Y   +  S  + L    K+L      + + I A  N +NV FV  + SPN    
Sbjct: 927  GGGLMAYFSSKMASCKVKLPKQYKLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 979

Query: 539  SDYEMKL 559
            +DY  KL
Sbjct: 980  TDYYRKL 986


>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1800

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
 Frame = +2

Query: 185  VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 364
            +IH NIN  + +L    +L K L +    LT+   D      QL A++  H+        
Sbjct: 1125 LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 1183

Query: 365  ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 538
              G   Y   +  S  + L    K L      + + I A  N +NV FV  + SPN    
Sbjct: 1184 GGGLMAYFSSKMASRKVKLPKQYKWL------EVLAINAIINNNNVLFVGIYRSPNPTG- 1236

Query: 539  SDYEMKL 559
            +DY  KL
Sbjct: 1237 TDYYRKL 1243


>SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08)
          Length = 438

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
 Frame = +2

Query: 185 VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 364
           +IH NIN  + +L    +L K L +    LT+   D      QL A++  H+        
Sbjct: 220 LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNDQL-ALEGYHIYRKDRKKG 278

Query: 365 ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 538
             G   Y   +  S  + L    ++L      + + I A  N +NV FV  + SPN    
Sbjct: 279 GGGLMAYFSSKMASRKVKLPKQYRLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 331

Query: 539 SDYEMKL 559
           +DY  KL
Sbjct: 332 TDYYRKL 338


>SB_17643| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00047)
          Length = 305

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
 Frame = +2

Query: 185 VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 364
           +IH NIN  + +L    +L K L +    LT+   D      QL A++  H+        
Sbjct: 94  LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 152

Query: 365 ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 538
             G       +  S  + L    K+L      + + I A  N +NV FV  + SPN    
Sbjct: 153 GGGLMANFSSKMASRKVKLPKQYKLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 205

Query: 539 SDYEMKL 559
           +DY  KL
Sbjct: 206 TDYYCKL 212


>SB_50445| Best HMM Match : PT (HMM E-Value=2)
          Length = 206

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 515 ESPNQEKVSDYEMKLMNLDLEHL--GIPETEYSCTIRMPSSEFARICRDLSQFGESMVIS 688
           E  N++ +   E K+ N   +++  G P TE+ CT R+P        +  S    ++   
Sbjct: 5   EKCNEKSIIIKERKVNNSMKQNVPTGYPSTEHKCTNRVPKQPTQMYQQGTSTPNTNVPTR 64

Query: 689 CTKEGVKSRQQATSAQRTS 745
             K   +  QQ TS   T+
Sbjct: 65  VPKHRTQMYQQGTSTPNTN 83


>SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92)
          Length = 655

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +2

Query: 179 IEVIH*NINMFEARLLRSSILKKVLEAIKDLLTQA-TFDCDDNGIQLQAMDNSHVSLVSL 355
           ++VI    N  + + L    L+ +LEA+K+LL Q+ +F C+++ ++L  ++  H+S  SL
Sbjct: 14  LQVIQAITNYLDKKELEVDKLQAILEAVKNLLNQSLSFLCEES-LRL-PINKDHLSFSSL 71


>SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06)
          Length = 368

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 303 LSSQSKVACVSRSLIASSTFFKIELRSKRASNMFIF*CITSIIL 172
           +S   +VA      +  S  FK+ L SK++S+  +  C T I+L
Sbjct: 38  MSVAERVAAERAEKLGDSVGFKVRLESKQSSSTRLLYCTTGILL 81


>SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33)
          Length = 535

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 530 EKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEF 637
           E + + EMKL  LDLE++ IPE+  +     P+ +F
Sbjct: 496 ETLLNMEMKLRLLDLENISIPESPPAIPPEPPNYDF 531


>SB_5863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 19/88 (21%), Positives = 38/88 (43%)
 Frame = +2

Query: 473 IKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFARICR 652
           ++ QD+ D++  + +S   E        L + D  H GIP      +  +P+ + +R   
Sbjct: 433 VENQDSDDSIDDINKSSGSETKQSQPHPLQDPDYSHTGIPREPSQESDFLPAVDRSRTST 492

Query: 653 DLSQFGESMVISCTKEGVKSRQQATSAQ 736
            LS + +        +G  SR  + S++
Sbjct: 493 ALSMYSDDFE---AVQGSDSRSNSVSSR 517


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,823,675
Number of Sequences: 59808
Number of extensions: 494489
Number of successful extensions: 1255
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)