Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O24
(911 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2 (P... 248 4e-66
At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1 (P... 248 5e-66
At2g36960.2 68415.m04533 myb family transcription factor contain... 31 1.4
At2g36960.1 68415.m04532 myb family transcription factor contain... 31 1.4
At1g22160.1 68414.m02770 senescence-associated protein-related s... 30 1.9
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 3.2
At2g42750.1 68415.m05294 DNAJ heat shock N-terminal domain-conta... 29 5.7
At5g02930.1 68418.m00236 F-box family protein low similarity to ... 28 9.9
>At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2
(PCNA2) identical to SP|Q9ZW35 Proliferating cell
nuclear antigen 2 (PCNA 2) {Arabidopsis thaliana};
nearly identical to SP|Q43124 Proliferating cell nuclear
antigen (PCNA) {Brassica napus}; contains Pfam profiles
PF00705: Proliferating cell nuclear antigen N-terminal
domain, PF02747: Proliferating cell nuclear antigen
C-terminal domain
Length = 264
Score = 248 bits (607), Expect = 4e-66
Identities = 110/168 (65%), Positives = 140/168 (83%)
Frame = +2
Query: 206 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 385
M E RL++ S+LKKVLEA+KDL+ A FDC G LQAMD+SHV+LVSL LR++GF+ Y
Sbjct: 1 MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQAMDSSHVALVSLLLRSEGFEHY 60
Query: 386 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 565
RCDRN+SMGMNLG+MSK+LKCAG+ D +TIKA D +D VTF+FESP Q+K++D+EMKLM+
Sbjct: 61 RCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
Query: 566 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 709
+D EHLGIP+ EY +RMPS EF+RIC+DLS G+++VIS TKEGVK
Sbjct: 121 IDSEHLGIPDAEYHSIVRMPSGEFSRICKDLSSIGDTVVISVTKEGVK 168
Score = 58.4 bits (135), Expect = 6e-09
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 694 KRRSKVSATGDIGSANVKLAQTASIDKEEXAVVIEMEXP-SL*RLPASTQLFTKATSLSP 870
K K S GDIG+AN+ L Q ++DK E A+VIEM P SL FTKAT LS
Sbjct: 164 KEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSE 223
Query: 871 QVXLSXSAXVPLV 909
V +S S+ +P+V
Sbjct: 224 TVTISLSSELPVV 236
>At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1
(PCNA1) identical to SP|Q9M7Q7 Proliferating cellular
nuclear antigen 1 (PCNA 1) {Arabidopsis thaliana};
nearly identical to SP|Q43124 Proliferating cell nuclear
antigen (PCNA) {Brassica napus}; contains Pfam profiles
PF00705: Proliferating cell nuclear antigen N-terminal
domain, PF02747: Proliferating cell nuclear antigen
C-terminal domain
Length = 263
Score = 248 bits (606), Expect = 5e-66
Identities = 110/168 (65%), Positives = 140/168 (83%)
Frame = +2
Query: 206 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 385
M E RL++ S+LKKVLE+IKDL+ A FDC G LQAMD+SHV+LVSL LR++GF+ Y
Sbjct: 1 MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHY 60
Query: 386 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 565
RCDRN+SMGMNLG+MSK+LKCAG+ D +TIKA D D VTF+FESP Q+K++D+EMKLM+
Sbjct: 61 RCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMD 120
Query: 566 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 709
+D EHLGIP+ EY +RMPS+EF+RIC+DLS G+++VIS TKEGVK
Sbjct: 121 IDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGDTVVISVTKEGVK 168
Score = 58.8 bits (136), Expect = 5e-09
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = +1
Query: 694 KRRSKVSATGDIGSANVKLAQTASIDKEEXAVVIEMEXP-SL*RLPASTQLFTKATSLSP 870
K K S GDIG+AN+ L Q ++DK E A+VIEM+ P SL FTKAT LS
Sbjct: 164 KEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLSD 223
Query: 871 QVXLSXSAXVPLV 909
V +S S+ +P+V
Sbjct: 224 TVTISLSSELPVV 236
>At2g36960.2 68415.m04533 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 741
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 257 AIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFD 379
+I DLL++ D D +G+ A + SH L + +D FD
Sbjct: 529 SIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFD 569
>At2g36960.1 68415.m04532 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 743
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 257 AIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFD 379
+I DLL++ D D +G+ A + SH L + +D FD
Sbjct: 531 SIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFD 571
>At1g22160.1 68414.m02770 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana]
Length = 147
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +2
Query: 452 GDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSS 631
G + IK + + F P++++ SD++++L+N+D EH + + + S
Sbjct: 4 GKRQRPPIKRTTSLSEIKFDLNQPSEQEPSDHQIQLVNVD-EHRQVHQRLLDQRLLAMVS 62
Query: 632 EFARICRDLSQFGESMVISCT 694
R S + E + SC+
Sbjct: 63 PRGTQRRHSSDYSEDFLRSCS 83
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = -2
Query: 685 NHH*FSKL*EIPTDSSKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKNK 506
+H FSKL +P S KF + +A L + + ++H L VI D LL A+
Sbjct: 355 DHPIFSKLLPVPFSSGKFFSADHLTAIGNCLKESTFCQPRVHSLWPVIVDMLLPEAVVQS 414
Query: 505 CDIVSI 488
D+VS+
Sbjct: 415 EDVVSV 420
>At2g42750.1 68415.m05294 DNAJ heat shock N-terminal
domain-containing protein low similarity to GFA2
[Arabidopsis thaliana] GI:21429604; contains Pfam
profile PF00226: DnaJ domain
Length = 344
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 644 ICRDLSQFGESMVISCTKEGVKSRQQATSAQRTSSWPRPLLLTKRRXQS 790
+C DL +F S + S + G R A + +SSW P KRR S
Sbjct: 8 VCTDLLKFQNSALSS--RSGASPRFSAKTTGASSSWYLPRYAGKRRTDS 54
>At5g02930.1 68418.m00236 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 469
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 720 CCRDFTPSFVHEITIDSPNCERSRQILANSELGMRIVQLYSVSGIP 583
C DF P H++ + ++ Q + LG+ ++Q+ S+S IP
Sbjct: 278 CYHDFDPLDPHDLLVMVQTMLKTFQKVEKLTLGVNLLQMLSLSKIP 323
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,283,243
Number of Sequences: 28952
Number of extensions: 337539
Number of successful extensions: 779
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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