Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O22
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.098
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.92 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.098
 Identities = 22/55 (40%), Positives = 23/55 (41%)
 Frame = -1

Query: 703 GGF*XFGGXXGGXRXXFXKXXGGGXF*XXKXFXXXGXGGPXXXGGGXFXGGXGGF 539
           GGF  FGG  GG         G G F   +     G GG    G G F GG GGF
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGF-GGEGHHHGGHGG-FGGGPGGFEGGPGGF 240


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
 Frame = +3

Query: 543 PPXPPKKX-------PPPXXXGPPXPXXKKXFXX*XXPPPXFXKKXXLXPPXXPP 686
           PP PP+         PP     PP P  +        PPP    +    PP  PP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +2

Query: 560 KXPPPPXXGXPXPXXXKXFXPLKXXPPPXFXKXXPXPPPXAP 685
           K PPPP      P       P+   PPP      P PPP  P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPV---PPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +2

Query: 566 PPPPXXGXPXPXXXKXFXPLKXXPPPXFXKXXPXPPPXAPKXLKXPP 706
           PPPP    P P       P+   PP       P PPP        PP
Sbjct: 734 PPPPAVIVPTPAPA----PIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
 Frame = +2

Query: 536 PKXPXXPXKXPPPPXXGXPXPXXXKXF-XPLKXXPPPXFXKXXPXPPPXAP 685
           P  P      P P     P P        P    PPP      P PPP  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 543 PPXPPKKXPPPXXXGP 590
           PP PPK  PPP    P
Sbjct: 195 PPMPPKVPPPPLSQAP 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,767
Number of Sequences: 5004
Number of extensions: 17137
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)