Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O20
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.30 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 20/54 (37%), Positives = 21/54 (38%)
 Frame = +3

Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPXGGXGGXXGFXAXPXGE 572
           P  GG  PP    PP P   G G     P PPP  PP    GG   +   P  E
Sbjct: 756 PIMGGPPPP----PPPPGVAGAG-----PPPPPPPPPAVSAGGSRYYAPAPQAE 800



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = -2

Query: 538 PPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPXPGILKT 398
           PP PP  G  G G    P  P     G          + P P I +T
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDET 808


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 719 NGGXFXGFXGGGXFXKXPXXXPXGXFXPFXG 627
           NGG F GF GGG     P     G F  F G
Sbjct: 186 NGGGFGGF-GGGSGGPPPGPGGFGGFGGFGG 215



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/61 (32%), Positives = 20/61 (32%)
 Frame = +3

Query: 414 GXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPXGGXGGXXGFXAXPXGETGXPKXX 593
           G GG        PP P   G GF G            G  GG  GF   P G  G P   
Sbjct: 189 GFGGFGGGSGGPPPGPGGFG-GFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247

Query: 594 G 596
           G
Sbjct: 248 G 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,614
Number of Sequences: 5004
Number of extensions: 17286
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)