Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O20
(911 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 33 0.32
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 33 0.32
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 32 0.74
SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 29 3.9
SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_8730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_466| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 28 9.1
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 28 9.1
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 28 9.1
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 33.1 bits (72), Expect = 0.32
Identities = 24/70 (34%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Frame = +3
Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPXG-GXGGXXGFXAXPXGETGXPK 587
PG P P P +G W P PP PP G G G A P G G P
Sbjct: 1815 PGNPAGPPGLDGPPGPPGPQGPKGWPGVPGPP--GPPGAYGWKGYPGNPAGPPGRDGIPG 1872
Query: 588 XXGXHQXKKG 617
G Q KG
Sbjct: 1873 PPG-RQGGKG 1881
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 33.1 bits (72), Expect = 0.32
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -2
Query: 547 PXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPXP 413
P PP PP GG GG P P P GG +PP P
Sbjct: 660 PPPPPPPPPGG-QAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPP 703
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 31.9 bits (69), Expect = 0.74
Identities = 28/82 (34%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Frame = +3
Query: 411 PGX-GGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPX-GGXGGXXGFXAXPXGETGXP 584
PG G PP PP P+ G G P P PP G G G A P G G P
Sbjct: 443 PGPLGDVGPPGLPGPPGPQMP-PGPPGLPGAPGPNGPPGINGPLGPPG-EAGPPGNPGGP 500
Query: 585 KXXGXHQXKKGXQKALKXXEPP 650
G H G Q PP
Sbjct: 501 GYQGNHGNPAGPQGPNGQPGPP 522
Score = 31.9 bits (69), Expect = 0.74
Identities = 28/82 (34%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Frame = +3
Query: 411 PGX-GGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPX-GGXGGXXGFXAXPXGETGXP 584
PG G PP PP P+ G G P P PP G G G A P G G P
Sbjct: 528 PGPLGDVGPPGLPGPPGPQMP-PGPPGLPGAPGPNGPPGINGPLGPPG-EAGPPGNPGGP 585
Query: 585 KXXGXHQXKKGXQKALKXXEPP 650
G H G Q PP
Sbjct: 586 GYQGNHGNPAGPQGPNGQPGPP 607
>SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -1
Query: 698 FXGGGXFXKXPXXXPXGXFXPFXGLLXTFFXLVXPXXLGXT 576
F GGG + K P P PF GLL T L P L T
Sbjct: 404 FEGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWIT 444
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPP 521
P G PP PP P G P PPP PP
Sbjct: 958 PPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPPP 994
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXP 470
P G P P G P PP PP GGG P+ P P
Sbjct: 647 PFFGGIPPPPPGGGMFPPPPPPPP-----GGGVPGPPKPPPP 683
>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 901
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -1
Query: 692 GGGXFXKXPXXXPXGXFXPFXGLLXTFFXLVXPXXLGXT 576
GGG + K P P PF GLL T L P L T
Sbjct: 759 GGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWIT 797
>SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -1
Query: 692 GGGXFXKXPXXXPXGXFXPFXGLLXTFFXLVXPXXLGXT 576
GGG + K P P PF GLL T L P L T
Sbjct: 1 GGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWIT 39
>SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -1
Query: 692 GGGXFXKXPXXXPXGXFXPFXGLLXTFFXLVXPXXLGXT 576
GGG + K P P PF GLL T L P L T
Sbjct: 24 GGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWIT 62
>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -1
Query: 692 GGGXFXKXPXXXPXGXFXPFXGLLXTFFXLVXPXXLGXT 576
GGG + K P P PF GLL T L P L T
Sbjct: 555 GGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWIT 593
>SB_8730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -1
Query: 692 GGGXFXKXPXXXPXGXFXPFXGLLXTFFXLVXPXXLGXT 576
GGG + K P P PF GLL T L P L T
Sbjct: 23 GGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWIT 61
>SB_466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -1
Query: 692 GGGXFXKXPXXXPXGXFXPFXGLLXTFFXLVXPXXLGXT 576
GGG + K P P PF GLL T L P L T
Sbjct: 1 GGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWIT 39
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 452 PXPPGKGXXXLGXXPXPPP 508
P PPG+ LG P PPP
Sbjct: 358 PPPPGRAPQPLGGPPPPPP 376
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 452 PXPPGKGXXXLGXXPXPPP 508
P PPG+ LG P PPP
Sbjct: 270 PPPPGRAPQPLGGPPPPPP 288
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP 509
P GG PP PP P G G P PPP
Sbjct: 308 PPPGGAPPPPPPPPPPPPGDG----GAPPPPPP 336
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,315
Number of Sequences: 59808
Number of extensions: 201529
Number of successful extensions: 505
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -