Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O20
(911 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 39 0.006
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 39 0.006
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 32 0.49
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 32 0.49
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 32 0.49
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 32 0.65
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 32 0.65
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 32 0.65
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.86
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.86
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.86
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 31 1.1
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 31 1.1
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 31 1.5
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 31 1.5
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 31 1.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.0
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 2.6
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 3.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 8.1
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 28 8.1
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 28 8.1
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 28 8.1
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 28 8.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 8.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 8.1
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/60 (33%), Positives = 22/60 (36%)
Frame = +2
Query: 452 PXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKKRXXKGP 631
P PPG+ G PPP P G G G G R P G PP + GP
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 360
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/68 (30%), Positives = 21/68 (30%)
Frame = -2
Query: 616 PFFXWWXPXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXX 437
P W P P G P PP PP G G P P P G
Sbjct: 291 PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP------GMRYP 344
Query: 436 GGXSPPXP 413
GG PP P
Sbjct: 345 GGMPPPPP 352
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPX 416
P P P P PP PP G P P P G G G PP
Sbjct: 281 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM--GGMPPPPP 338
Query: 415 PGI 407
PG+
Sbjct: 339 PGM 341
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/60 (33%), Positives = 22/60 (36%)
Frame = +2
Query: 452 PXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKKRXXKGP 631
P PPG+ G PPP P G G G G R P G PP + GP
Sbjct: 311 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 370
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/68 (30%), Positives = 21/68 (30%)
Frame = -2
Query: 616 PFFXWWXPXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXX 437
P W P P G P PP PP G G P P P G
Sbjct: 301 PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP------GMRYP 354
Query: 436 GGXSPPXP 413
GG PP P
Sbjct: 355 GGMPPPPP 362
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPX 416
P P P P PP PP G P P P G G G PP
Sbjct: 291 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM--GGMPPPPP 348
Query: 415 PGI 407
PG+
Sbjct: 349 PGM 351
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 32.3 bits (70), Expect = 0.49
Identities = 24/80 (30%), Positives = 28/80 (35%)
Frame = +3
Query: 345 EPXKPGKXXRXXXXGXXXVLRIPGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPX 524
+P PG+ + G V G G PP PP G G P PP P
Sbjct: 227 QPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPPGQDGSG-GAAQPGPPGPPGPPGN 285
Query: 525 GGXGGXXGFXAXPXGETGXP 584
G G G P G+ G P
Sbjct: 286 DGQPGGPGQPGGP-GQDGGP 304
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 32.3 bits (70), Expect = 0.49
Identities = 20/69 (28%), Positives = 23/69 (33%)
Frame = +3
Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPXGGXGGXXGFXAXPXGETGXPKX 590
P GG PP G + PPP PP GG G+ A P G G
Sbjct: 33 PSCGGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPPAPIGGGAGY-AAPFGGPGPVGG 91
Query: 591 XGXHQXKKG 617
Q +G
Sbjct: 92 ASYSQGPQG 100
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 32.3 bits (70), Expect = 0.49
Identities = 20/69 (28%), Positives = 23/69 (33%)
Frame = +3
Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPXGGXGGXXGFXAXPXGETGXPKX 590
P GG PP G + PPP PP GG G+ A P G G
Sbjct: 33 PSCGGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPPAPIGGGAGY-AAPFGGPGPVGG 91
Query: 591 XGXHQXKKG 617
Q +G
Sbjct: 92 ASYSQGPQG 100
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 31.9 bits (69), Expect = 0.65
Identities = 23/86 (26%), Positives = 25/86 (29%)
Frame = +2
Query: 434 PXXXXTPXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKK 613
P P PGKG PPP P G G G G G P G P
Sbjct: 126 PGAPGNPGAPGKGAAVPCEAKTPPPCKPCPAGPPGPPGPDG--PAGPAGPDGEAGSPAAP 183
Query: 614 RXXKGPXXAGTXXXAXXGGFSXRXPP 691
P +G A G + P
Sbjct: 184 SPPGPPGPSGPAGPAGNDGAAGTPGP 209
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 31.9 bits (69), Expect = 0.65
Identities = 18/52 (34%), Positives = 20/52 (38%)
Frame = -2
Query: 574 VSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPP 419
++P A P PP PP G G G P P P G GG PP
Sbjct: 622 MAPISSAAPPPPPPPPPM-GLPAVGAGAPPPPPPPPPSGAGGPASVLAKLPP 672
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Frame = +3
Query: 450 PPXPRXKGXGFWGXXPXPPP*XPPXGGXGGXXGFXA-XPXGETGXPKXXGXHQXKKGXQK 626
PP P G G PPP PP G GG A P + G Q K +
Sbjct: 633 PPPPPPMGLPAVGAGAPPPPPPPPPSGAGGPASVLAKLPPAQDGRSNLLAEIQAGKQLRS 692
Query: 627 ALKXXEPP 650
+ + P
Sbjct: 693 VQQTADSP 700
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 31.9 bits (69), Expect = 0.65
Identities = 18/52 (34%), Positives = 20/52 (38%)
Frame = -2
Query: 574 VSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPP 419
++P A P PP PP G G G P P P G GG PP
Sbjct: 448 MAPISSAAPPPPPPPPPM-GLPAVGAGAPPPPPPPPPSGAGGPASVLAKLPP 498
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Frame = +3
Query: 450 PPXPRXKGXGFWGXXPXPPP*XPPXGGXGGXXGFXA-XPXGETGXPKXXGXHQXKKGXQK 626
PP P G G PPP PP G GG A P + G Q K +
Sbjct: 459 PPPPPPMGLPAVGAGAPPPPPPPPPSGAGGPASVLAKLPPAQDGRSNLLAEIQAGKQLRS 518
Query: 627 ALKXXEPP 650
+ + P
Sbjct: 519 VQQTADSP 526
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.86
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPX 416
P G P P G PP PP G G P P P GG G PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP-----GGLPPISGGPPPP 761
Query: 415 P 413
P
Sbjct: 762 P 762
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +3
Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPXGGXGG 539
P G PP PP P G P PPP PP G GG
Sbjct: 745 PPPPGGLPPISGGPPPPPPPP----GGCPPPPPPPPPGGFKGG 783
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 432 PPXXXKPPXPRXKGXGFWGXXPXPPP 509
PP PP P GF G P PPP
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPXGG 530
P GG P PP P G P PPP PP GG
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP--PPPGG 767
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGG 503
P G P P P PP PP GG GG
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.86
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPX 416
P G P P G PP PP G G P P P GG G PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP-----GGLPPISGGPPPP 761
Query: 415 P 413
P
Sbjct: 762 P 762
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +3
Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPXGGXGG 539
P G PP PP P G P PPP PP G GG
Sbjct: 745 PPPPGGLPPISGGPPPPPPPP----GGCPPPPPPPPPGGFKGG 783
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 432 PPXXXKPPXPRXKGXGFWGXXPXPPP 509
PP PP P GF G P PPP
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPXGG 530
P GG P PP P G P PPP PP GG
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP--PPPGG 767
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGG 503
P G P P P PP PP GG GG
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.86
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPX 416
P G P P G PP PP G G P P P GG G PP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP-----GGLPPISGGPPPP 344
Query: 415 P 413
P
Sbjct: 345 P 345
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +3
Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPXGGXGG 539
P G PP PP P G P PPP PP G GG
Sbjct: 328 PPPPGGLPPISGGPPPPPPPP----GGCPPPPPPPPPGGFKGG 366
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 432 PPXXXKPPXPRXKGXGFWGXXPXPPP 509
PP PP P GF G P PPP
Sbjct: 347 PPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 411 PGXGGXXPPXXXKPPXPRXKGXGFWGXXPXPPP*XPPXGG 530
P GG P PP P G P PPP PP GG
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP--PPPGG 350
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGG 503
P G P P P PP PP GG GG
Sbjct: 336 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/114 (25%), Positives = 34/114 (29%)
Frame = -2
Query: 685 GPXGKXPXXGPXGGSXXXRAFXXPFFXWWXPXXLGXPVSPXGXAXKPXXPPXPPXGGXYG 506
G GK G G + F + G P + G P PP PP G
Sbjct: 108 GNDGKAGQPGAPGADADEQGFHYKAPEFCFDCPAGPPGAVGGPG--PKGPPGPPGGPGEL 165
Query: 505 GGXGXXPQXPXPFXRGXGGXLXXGGXSPPXPGILKTKXXPXXXXLXFXPGFXGS 344
GG G P RG G G +T+ P PG GS
Sbjct: 166 GGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQTRSAPSPPGQPGQPGEPGS 219
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = +2
Query: 458 PPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPP 604
P G G P PP P G G G GGNR P G PP
Sbjct: 140 PAGPPGAVGGPGPKGPPGPPGGPGELGGPG-----RGGNRGPPGPRGPP 183
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/114 (25%), Positives = 34/114 (29%)
Frame = -2
Query: 685 GPXGKXPXXGPXGGSXXXRAFXXPFFXWWXPXXLGXPVSPXGXAXKPXXPPXPPXGGXYG 506
G GK G G + F + G P + G P PP PP G
Sbjct: 108 GNDGKAGQPGAPGADADEQGFHYKAPEFCFDCPAGPPGAVGGPG--PKGPPGPPGGPGEL 165
Query: 505 GGXGXXPQXPXPFXRGXGGXLXXGGXSPPXPGILKTKXXPXXXXLXFXPGFXGS 344
GG G P RG G G +T+ P PG GS
Sbjct: 166 GGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQTRSAPSPPGQPGQPGEPGS 219
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = +2
Query: 458 PPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPP 604
P G G P PP P G G G GGNR P G PP
Sbjct: 140 PAGPPGAVGGPGPKGPPGPPGGPGELGGPG-----RGGNRGPPGPRGPP 183
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 517 GXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPXPGILKT 398
G YG G G P P G GG + PP PG L +
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMPGDLSS 688
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 517 GXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPXPGILKT 398
G YG G G P P G GG + PP PG L +
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMPGDLSS 688
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/96 (26%), Positives = 29/96 (30%), Gaps = 3/96 (3%)
Frame = +2
Query: 413 GGXXGXX--PXXXXTPXPPGKGXXXLGXXPXPPPVXPXXX-GXXGXXGFXGXXXGGNRXP 583
GG G P P PG+ G P P P G G G G G + P
Sbjct: 236 GGPPGQDGHPGDAGAPGAPGQVVAGPGSVGPPGPQGPPGLAGPDGQPGHGGGGQPGPQGP 295
Query: 584 QGXGXPPTKKRXXKGPXXAGTXXXAXXGGFSXRXPP 691
G P + GP G + G PP
Sbjct: 296 PGDDGHPGEDGGAGGPGQPGQDGGSGGSGACDHCPP 331
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Frame = -3
Query: 594 PXPWGNR---FPPXXXPXNPXXPXYPXXXGFTGGGXGXXPKXXXPXPGGXG 451
P P G R PP P P P G GGG G P PG G
Sbjct: 771 PAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGG 821
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Frame = -3
Query: 594 PXPWGNR---FPPXXXPXNPXXPXYPXXXGFTGGGXGXXPKXXXPXPGGXG 451
P P G R PP P P P G GGG G P PG G
Sbjct: 771 PAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGG 821
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +2
Query: 434 PXXXXTPXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKK 613
P +P PP G PP P G GG+ P G G PP
Sbjct: 274 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333
Query: 614 R 616
R
Sbjct: 334 R 334
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +2
Query: 434 PXXXXTPXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKK 613
P +P PP G PP P G GG+ P G G PP
Sbjct: 295 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354
Query: 614 R 616
R
Sbjct: 355 R 355
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +2
Query: 434 PXXXXTPXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKK 613
P +P PP G PP P G GG+ P G G PP
Sbjct: 280 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339
Query: 614 R 616
R
Sbjct: 340 R 340
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = -2
Query: 538 PPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXL--XXGGXSPPXP 413
PP PP G GG P P +G L GG PP P
Sbjct: 538 PPPPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGGPPPPPP 581
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +2
Query: 494 PXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKKRXXKGPXXAGT 646
P PP P G G G G G P G PP + P AG+
Sbjct: 180 PPGPPGQPGQPGQRGPPGEPGALLPGGDAPPGPSGPPGRPGAPGQPGKAGS 230
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/79 (27%), Positives = 22/79 (27%)
Frame = +2
Query: 434 PXXXXTPXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKK 613
P P PGKG PP P G G G G P G P
Sbjct: 122 PGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAG-----PAGPPGPPGPDGNPGSP 176
Query: 614 RXXKGPXXAGTXXXAXXGG 670
GP AG A G
Sbjct: 177 AGPSGPGPAGPPGPAGPAG 195
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/79 (27%), Positives = 22/79 (27%)
Frame = +2
Query: 434 PXXXXTPXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKK 613
P P PGKG PP P G G G G P G P
Sbjct: 122 PGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAG-----PAGPPGPPGPDGNPGSP 176
Query: 614 RXXKGPXXAGTXXXAXXGG 670
GP AG A G
Sbjct: 177 AGPSGPGPAGPPGPAGPAG 195
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Frame = -2
Query: 577 PVSPXGXAXKPXX--PPXPPXG-GXYG-GGXGXXPQXPXPFXRGXGGXLXXGGXSPPXPG 410
PV P G A P PP PP G G G G G P P G +P PG
Sbjct: 145 PVGPAGPAGGPGPKGPPGPPGGHGEPGPAGRGGPRGPPGPGGPQGEAGEDGGAGNPGTPG 204
Query: 409 ILKTKXXP 386
+++ P
Sbjct: 205 QVRSLPSP 212
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/63 (31%), Positives = 21/63 (33%)
Frame = +2
Query: 458 PPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKKRXXKGPXX 637
P G G P PP P G G G GG R P G G P + G
Sbjct: 145 PVGPAGPAGGPGPKGPPGPPGGHGEPGPAG-----RGGPRGPPGPGGPQGEAGEDGGAGN 199
Query: 638 AGT 646
GT
Sbjct: 200 PGT 202
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 583 GXPVSPXGXAXKPXXPPXPPXGGXYGG 503
G P P G P PP P GG GG
Sbjct: 54 GYPRPPIGYGAPPPPPPPPAFGGLGGG 80
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 583 GXPVSPXGXAXKPXXPPXPPXGGXYGG 503
G P P G P PP P GG GG
Sbjct: 54 GYPRPPIGYGAPPPPPPPPAFGGLGGG 80
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 583 GXPVSPXGXAXKPXXPPXPPXGGXYGG 503
G P P G P PP P GG GG
Sbjct: 54 GYPRPPIGYGAPPPPPPPPAFGGLGGG 80
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/79 (27%), Positives = 22/79 (27%)
Frame = +2
Query: 434 PXXXXTPXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKK 613
P P PGKG PP P G G G G P G P
Sbjct: 122 PGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAG-----PAGPPGPPGPDGNPGSP 176
Query: 614 RXXKGPXXAGTXXXAXXGG 670
GP AG A G
Sbjct: 177 AGPSGPGPAGPPGPAGPAG 195
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/79 (27%), Positives = 22/79 (27%)
Frame = +2
Query: 434 PXXXXTPXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKK 613
P P PGKG PP P G G G G P G P
Sbjct: 122 PGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAG-----PAGPPGPPGPDGNPGSP 176
Query: 614 RXXKGPXXAGTXXXAXXGG 670
GP AG A G
Sbjct: 177 AGPSGPGPAGPPGPAGPAG 195
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 8.1
Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Frame = +3
Query: 420 GGXXPPXXXKP----PXPRXKGXGFWGXXPXPPP*XPPXGGXGGXXGFXAXPXGETGXPK 587
GG PP P P P+ G + P P P G GG G+ P G G P
Sbjct: 365 GGPPPPVSSAPGNFAPPPQSGPPGAFA--PPPSAFGAPQG-PGGPGGYGPPPPGGPGAPG 421
Query: 588 XXGXHQXKKGXQKALKXXEPPXGP 659
G Q G PP GP
Sbjct: 422 SYGPPQGGPGG----FGPPPPGGP 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,136,763
Number of Sequences: 27780
Number of extensions: 187434
Number of successful extensions: 1036
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -