Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O20
(911 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15830.1 68414.m01900 expressed protein 34 0.15
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 31 0.80
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 31 1.1
>At1g15830.1 68414.m01900 expressed protein
Length = 483
Score = 33.9 bits (74), Expect = 0.15
Identities = 22/62 (35%), Positives = 23/62 (37%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPX 416
P G P G +P P PP GGG P P P RG GG G PP
Sbjct: 197 PVIPGAPPPKRGGGGEPVIPGAPPPKRG-GGGEPVIPGAPLP-KRGGGGESVVPGAPPPK 254
Query: 415 PG 410
G
Sbjct: 255 RG 256
Score = 33.5 bits (73), Expect = 0.20
Identities = 22/62 (35%), Positives = 23/62 (37%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPX 416
P G P G +P P PP GGG P P P RG GG G PP
Sbjct: 133 PAIPGAPPPKRGGGGEPVIPGAPPPKRG-GGGEPVIPGAPPP-KRGGGGEPVIPGAPPPK 190
Query: 415 PG 410
G
Sbjct: 191 RG 192
Score = 33.5 bits (73), Expect = 0.20
Identities = 22/62 (35%), Positives = 23/62 (37%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPX 416
P G P G +P P PP GGG P P P RG GG G PP
Sbjct: 149 PVIPGAPPPKRGGGGEPVIPGAPPPKRG-GGGEPVIPGAPPP-KRGGGGEPVIPGAPPPK 206
Query: 415 PG 410
G
Sbjct: 207 RG 208
Score = 33.5 bits (73), Expect = 0.20
Identities = 22/62 (35%), Positives = 23/62 (37%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPX 416
P G P G +P P PP GGG P P P RG GG G PP
Sbjct: 165 PVIPGAPPPKRGGGGEPVIPGAPPPKRG-GGGEPVIPGAPPP-KRGGGGEPVIPGAPPPK 222
Query: 415 PG 410
G
Sbjct: 223 RG 224
Score = 31.9 bits (69), Expect = 0.61
Identities = 20/59 (33%), Positives = 23/59 (38%)
Frame = -2
Query: 586 LGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPXPG 410
+G + G +P P PP GGG P P P RG GG G PP G
Sbjct: 89 MGGTSATRGGGGEPVIPGAPPPNR--GGGETVIPGAPPPI-RGGGGEPAIPGAPPPKRG 144
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/58 (36%), Positives = 22/58 (37%)
Frame = -2
Query: 583 GXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPXPG 410
G P G +P P PP GGG P P P RG GG G PP G
Sbjct: 121 GAPPPIRGGGGEPAIPGAPPPKRG-GGGEPVIPGAPPP-KRGGGGEPVIPGAPPPKRG 176
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/117 (24%), Positives = 33/117 (28%), Gaps = 4/117 (3%)
Frame = +2
Query: 425 GXXPXXXXTPXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPP 604
G P P PP +G PPP+ G G GG P G PP
Sbjct: 99 GGEPVIPGAP-PPNRGGGETVIPGAPPPIR-GGGGEPAIPGAPPPKRGGGGEPVIPGAPP 156
Query: 605 TKKRXXKGPXXAGTXXXAXXGG----FSXRXPPXXTXXXLPHCXXXPXKKKGXXETP 763
K+ P G GG PP P P K+G P
Sbjct: 157 PKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEP 213
Score = 29.9 bits (64), Expect = 2.4
Identities = 28/112 (25%), Positives = 31/112 (27%), Gaps = 4/112 (3%)
Frame = +2
Query: 425 GXXPXXXXTPXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPP 604
G P P PP +G P PP G G GG P G PP
Sbjct: 130 GGEPAIPGAP-PPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPP 188
Query: 605 TKKRXXKGPXXAGTXXXAXXGG----FSXRXPPXXTXXXLPHCXXXPXKKKG 748
K+ P G GG PP P P K+G
Sbjct: 189 PKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPLPKRG 240
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/82 (26%), Positives = 24/82 (29%)
Frame = +2
Query: 425 GXXPXXXXTPXPPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPP 604
G P P PP +G P PP G G GG P G PP
Sbjct: 162 GGEPVIPGAP-PPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPP 220
Query: 605 TKKRXXKGPXXAGTXXXAXXGG 670
K+ P G GG
Sbjct: 221 PKRGGGGEPVIPGAPLPKRGGG 242
Score = 28.7 bits (61), Expect = 5.7
Identities = 26/106 (24%), Positives = 29/106 (27%), Gaps = 4/106 (3%)
Frame = +2
Query: 458 PPGKGXXXLGXXPXPPPVXPXXXGXXGXXGFXGXXXGGNRXPQGXGXPPTKKRXXKGPXX 637
PP +G P PP G G GG P G PP K+ P
Sbjct: 124 PPIRGGGGEPAIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVI 183
Query: 638 AGTXXXAXXGG----FSXRXPPXXTXXXLPHCXXXPXKKKGXXETP 763
G GG PP P P K+G P
Sbjct: 184 PGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEP 229
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/62 (33%), Positives = 21/62 (33%)
Frame = -2
Query: 595 PXXLGXPVSPXGXAXKPXXPPXPPXGGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPX 416
P G P G PP G GGG P P P RG GG G PP
Sbjct: 102 PVIPGAPPPNRGGGETVIPGAPPPIRG--GGGEPAIPGAPPP-KRGGGGEPVIPGAPPPK 158
Query: 415 PG 410
G
Sbjct: 159 RG 160
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = -2
Query: 547 PXXPPXPPXGGXY---GGGXGXXPQXPXPFXRGXGG 449
P PP PP GG GGG P P RG GG
Sbjct: 679 PPPPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGG 714
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Frame = -2
Query: 583 GXPVSPXGXAXKPXXPPXPPXGGXYGG----GXGXXPQXPXPFXRGXGGXLXXGGXSPPX 416
G P G P P P G +GG G G P+ P P+ G GG P
Sbjct: 30 GPGFGPGGPGFGPGGPGFGPGGPGFGGRGPRGPGFGPRGPGPWSGPRGPRPGGGGGPGPG 89
Query: 415 P 413
P
Sbjct: 90 P 90
Score = 28.7 bits (61), Expect = 5.7
Identities = 26/97 (26%), Positives = 27/97 (27%)
Frame = -2
Query: 700 GXXGGGPXGKXPXXGPXGGSXXXRAFXXPFFXWWXPXXLGXPVSPXGXAXKPXXPPXPPX 521
G GGGP G GG F G P G P P
Sbjct: 4 GGCGGGPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPRGPG 63
Query: 520 GGXYGGGXGXXPQXPXPFXRGXGGXLXXGGXSPPXPG 410
G G G P+ P P G G G P PG
Sbjct: 64 FGPRGPGPWSGPRGPRPGGGGGPGPGPWSGPRGPRPG 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,723,680
Number of Sequences: 28952
Number of extensions: 180213
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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