Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O18
(936 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.005
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.076
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.54
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +3
Query: 441 KNPPPPGXXGFXFXAPXPXPPXKPPPPXFXGGGXXXPPPXG 563
K+PPPP P P P PPP GG PPP G
Sbjct: 730 KSPPPP-PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Frame = +3
Query: 450 PPPGXXGFXFXAPXPX---PPXKPPPPXFXGGGXXXPPP 557
P P P P PP PPPP G G PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 446 PPPPXXXGXXFXGPXPXPPXKTPXPXXXGGGXGFXPP 556
PPPP G GP P PP P P GG + P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAP 795
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/46 (41%), Positives = 19/46 (41%)
Frame = +3
Query: 447 PPPPGXXGFXFXAPXPXPPXKPPPPXFXGGGXXXPPPXGGXXXXPK 584
PPPPG G A P PP PPPP GG P PK
Sbjct: 765 PPPPGVAG----AGPPPPP--PPPPAVSAGGSRYYAPAPQAEPEPK 804
Score = 29.1 bits (62), Expect = 0.94
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +1
Query: 442 KTPPPXGXGXXFXGPXPLXPPKNPXPPXXGGGXGXXPPXXGXXGXXPXXGXTP 600
K+PPP P P P P P GG PP G G P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP-PPPPPPGVAGAGPPPPPPP 781
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.076
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 556 GGGKXXPPPXXXGGGGFXGGXGXGAXKXXPXXPGGG 449
GGG PPP G GGF G G G GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 29.5 bits (63), Expect = 0.71
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -2
Query: 554 GGXXPXPPPKXGGXGFXGGXRGXGPKXKXPXPXGGG 447
GG PPP GG G GG G G GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 517 GGGFXGGXGXGAXKXXPXXPGGGGF 443
GGGF GG G G+ P G GGF
Sbjct: 187 GGGF-GGFGGGSGGPPPGPGGFGGF 210
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.54
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 486 PXPXPPXKPPPPXFXGGGXXXPPPXGG 566
P PP PPPP F PPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 447 PPPPGXXGFXFXAPXPXPPXKPPP 518
PPPP GF P PP PPP
Sbjct: 10 PPPPPPPGF---EPPSQPPPPPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.6
Identities = 27/112 (24%), Positives = 28/112 (25%), Gaps = 3/112 (2%)
Frame = +3
Query: 414 GXGXXXXXXKNPPPPGXXGFXFXAPXPXPPXK---PPPPXFXGGGXXXPPPXGGXXXXPK 584
G G PPPP P P PPPP PPP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387
Query: 585 XGGXPXKXXFTXGPXKXQXPKKXPXGGFFXKXPPPXXTXKXSPPLXXGGXPP 740
P P + P P G PP T PP PP
Sbjct: 388 PPAPPPAI-----PGR-SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.6
Identities = 27/108 (25%), Positives = 28/108 (25%)
Frame = +3
Query: 447 PPPPGXXGFXFXAPXPXPPXKPPPPXFXGGGXXXPPPXGGXXXXPKXGGXPXKXXFTXGP 626
PP P G P P P PP G P P P G P P
Sbjct: 1112 PPVPAPSG---APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP----VPKP 1164
Query: 627 XKXQXPKKXPXGGFFXKXPPPXXTXKXSPPLXXGGXPPGVXKKXXXSP 770
P P G PP PP+ P V K P
Sbjct: 1165 SVAAPPVPAPSSGI----PPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 486 PXPXPPXKPPPPXFXGGGXXXPPP 557
P P P PP P G PPP
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPP 1065
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = -3
Query: 604 FXGXPPXLGXXXXPPXGGGKXXPPPXXXGGGGFXGGXGXG 485
+ PP G P GGG P GG G GG G
Sbjct: 96 YYAPPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMG 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,591
Number of Sequences: 5004
Number of extensions: 27037
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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