Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O17
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.67
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 28 1.6
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 28 1.6
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 1.6
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 28 2.1
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.7
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 27 4.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.8
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 4.8
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.3
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 8.3
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.67
Identities = 39/148 (26%), Positives = 49/148 (33%), Gaps = 2/148 (1%)
Frame = +1
Query: 424 KQESAQAELSNPKLTQTDNSKAEVPKTEAPKTEALKPEAPIPEACKSEAPKSEESKIETR 603
K A LS P T A VP PK + P P+P A +AP
Sbjct: 988 KDHPPSAPLSKPVSTSPAAPLARVPPV--PKLSSKAPPVPLPSA---DAPPIPVPSTAPP 1042
Query: 604 GSKPESAADKPQXXXXXXXXXXXXXXRKKTRSRKPKFTAVETDIKYSKAPSSEPAIPGPS 783
P S P+ S P A ++I APS P +P PS
Sbjct: 1043 VPIPTSTPPVPKSSSGAP-------------SAPPPVPAPSSEIPSIPAPSGAPPVPAPS 1089
Query: 784 QSKPI--TSTASQPIQYVQNKPXVKAAP 861
P+ S A+ P+ KP V P
Sbjct: 1090 GIPPVPKPSVAAPPVP----KPSVAVPP 1113
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 158 KYTIAHLLKDLYEEIITTL*SWLEEKTKVVRKRHLILQKPL 280
K +I L+ L EE++TTL + LE K K V R+ L K L
Sbjct: 237 KQSIQLGLRPLSEEVVTTLKNLLEVKDKDVEGRNEALNKIL 277
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 682 RKKTRSRKPKFTAVETDIKYSKAP--SSEPAIPGPSQSKPITSTASQPIQ 825
R + +R P A E YS AP S E + P S KP S QP+Q
Sbjct: 301 RDREENRSP---AYEGSKSYSAAPEASMESSAPTESYDKPAASEEQQPLQ 347
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 445 ELSNPKLTQTDNSKAEVPKTEAPKTEALKPEAPIPE-ACKSEAPKSEESKIETR 603
E++N + + SK E PK E +PE PE + SE P+S + E++
Sbjct: 222 EVNNLEPVGQNESKQEPPKEENSNVSQEQPEQAQPEVSAASEQPESNPTTTESQ 275
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 424 KQESAQAELS---NPKLTQTDNSKAEVPKTEAPKTEALKPEAPIPEACKSEAPKSEESKI 594
K + ++A+LS N + DN+ A + PE P+ +A KS+ K++ SK+
Sbjct: 485 KSDKSRAKLSSDTNKDSEKNDNNDASLQSAGVASDGESSPETPLTKASKSK--KAKASKL 542
Query: 595 ETRGSKPESAADK 633
SK + K
Sbjct: 543 ANDTSKNANGETK 555
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 493 VPKTEAPKTEALKPEAPIPEA-CKSEAPKSEESKIET 600
VP+ P L P P+PE C E+P S+E+ ET
Sbjct: 130 VPEEPLPGEPPL-PNEPVPETNCHKESPLSDETVSET 165
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +1
Query: 493 VPKTEAPKTEALKPEAPIP----EACKSEAPKSEESKIETRGSKPESAADKP 636
+P+ P T LK + P+P + KS+ + + + +KPE KP
Sbjct: 8 IPRLRGPGTNVLKMKKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKP 59
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 706 PKFTAVETDIKYSKAPSSEPAIPGPSQSKPITSTASQP-IQYVQNKPXVKAAP 861
P T+VE I S SS+P S ++++SQP + + AAP
Sbjct: 150 PSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/57 (24%), Positives = 22/57 (38%)
Frame = +1
Query: 421 EKQESAQAELSNPKLTQTDNSKAEVPKTEAPKTEALKPEAPIPEACKSEAPKSEESK 591
+++E Q LS +K V +AP KP P+ AP + +K
Sbjct: 425 KQKEGEQTSLSEKTALSEPENKTPVFSFKAPSATTDKPSPPVSSIFSFNAPSAASTK 481
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 421 EKQESAQAELSNPKLTQTDNSKAEVPKTEAPKTEALKPEAPIPE 552
E +E + ELS L+ ++S P T +T A E+ IP+
Sbjct: 244 EDEEDSDVELSESSLSDDEDSPLRCPSTPV-QTAAAPNESQIPD 286
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 8.3
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Frame = +1
Query: 421 EKQESAQAELSNPKL--------TQTDN-SKAEVPKTEAPKTEALKPEAPIPEACKSEAP 573
E+ ES ++E+ PK +++D+ S E +TE+ + + E+ +SE+
Sbjct: 58 EESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESE 117
Query: 574 K---SEESKIETRGSKPESAADKPQ 639
+ SEE E+ S P S KP+
Sbjct: 118 EESESEEESDESERSGPSSFLKKPE 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,788
Number of Sequences: 5004
Number of extensions: 46032
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -