Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O16
         (892 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.60 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.2  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   4.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   7.4  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.8  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 585 NTTRKMIQTSFPHAVCKKPWHWYH 514
           N+T K + T  PH     P+ +YH
Sbjct: 5   NSTEKFLPTVLPHQEVPPPFGYYH 28


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 211 VARECAQVGKKPLIIKADISNDEE 282
           VA    Q GKKP  +K +  +DEE
Sbjct: 66  VAGGVQQAGKKPENVKKEDESDEE 89


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 451 AAPHLIETKGNIINVSSIGGTMVPMPGFLA-YC 546
           +AP +    G+ +N+  +G      PGF   YC
Sbjct: 33  SAPSICGEHGHCVNLPGVGHRCQCQPGFTGKYC 65


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 439 ITSLAAPHLIETKGNIINVSSIGGTMVPMPG 531
           + S   PH  +  G  + V   GG + P PG
Sbjct: 18  VVSAEHPHQHQHYGAAVQVPQGGGAVQPDPG 48


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 134 APIPELPPVTRTTLFVKLITSTPFKVPA*TQILRNSL 24
           +P+  LPP    T   ++   T   +    Q+LRN +
Sbjct: 480 SPMSSLPPYPNRTQITEVTQQTEPSIYQHDQLLRNKV 516


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,568
Number of Sequences: 336
Number of extensions: 4088
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)