Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O16
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    44   1e-06

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 7/202 (3%)
 Frame = +1

Query: 82  SFTNKVVLVTXXXXXXXXXXXVHFAKEGADVAIVGRNVTKLDNVARECAQVGKKPLIIKA 261
           ++ ++V LVT                +G  V  +   V K+  +  E      K + ++ 
Sbjct: 4   NWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQC 63

Query: 262 DISNDEEAKNIVQQTIDAFGKLDVLINNAAMNKAGSLLAGNLLESYDAVTATNLRAVILI 441
           D+SN  +   +++      G +D+LINNA +N   +L    +L+ +  +   NL  +  +
Sbjct: 64  DLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLD-WKKIFDINLLGLTCM 122

Query: 442 TSLAAPHLIE---TKGNIINVSSIGG-TMVPM-PGFLAYCMGKASLNHFTRGIALELA-- 600
                  + +     G I+N++   G  ++PM     AY   K +L   T  +  ELA  
Sbjct: 123 IQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQC 182

Query: 601 PRGVRANIISPGPVLTDILEEF 666
              ++   ISP  V TD+  ++
Sbjct: 183 ESNIKVISISPDLVETDMTAQW 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,419
Number of Sequences: 438
Number of extensions: 5120
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)