Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O15
(906 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 65 1e-11
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 65 1e-11
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 56 5e-09
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 56 7e-09
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 34 0.032
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 31 0.30
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 30 0.39
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 29 0.69
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 29 0.91
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 2.1
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 3.7
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 4.8
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 4.8
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 64.9 bits (151), Expect = 1e-11
Identities = 25/79 (31%), Positives = 49/79 (62%)
Frame = +1
Query: 448 SNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 627
++ ER RP NAF+++ + + + NP ++NS++SK +G W++ S+ + + ++
Sbjct: 98 TSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSE 157
Query: 628 RLRAVHMKEHPDYKYRPRR 684
+A H K +P YKY+PR+
Sbjct: 158 FYKAQHQKMYPGYKYQPRK 176
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 64.9 bits (151), Expect = 1e-11
Identities = 25/79 (31%), Positives = 49/79 (62%)
Frame = +1
Query: 448 SNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 627
++ ER RP NAF+++ + + + NP ++NS++SK +G W++ S+ + + ++
Sbjct: 98 TSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSE 157
Query: 628 RLRAVHMKEHPDYKYRPRR 684
+A H K +P YKY+PR+
Sbjct: 158 FYKAQHQKMYPGYKYQPRK 176
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 56.4 bits (130), Expect = 5e-09
Identities = 30/85 (35%), Positives = 54/85 (63%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
VKRP+N+FM++ R ++ ++ + N H S IS+ +G W++ S K+ + D + R
Sbjct: 16 VKRPLNSFMLYRRDRQAEIPTSN---HQS-ISRIIGQLWRNESAQVKKYYSDLSALERQK 71
Query: 643 HMKEHPDYKYRPRRKTKTPGLKNKK 717
HM E+P+YKY P++++ T ++KK
Sbjct: 72 HMLENPEYKYTPKKRS-TVRRRHKK 95
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 56.0 bits (129), Expect = 7e-09
Identities = 26/86 (30%), Positives = 48/86 (55%)
Frame = +1
Query: 439 SKNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFID 618
S+ + KR M+AFM +S R KM +DNP ++ LG +WK+L+ +E+ P+ +
Sbjct: 8 SRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEE 67
Query: 619 EAKRLRAVHMKEHPDYKYRPRRKTKT 696
+A++ + + +E +Y + KT
Sbjct: 68 KARQDKERYERERKEYDTKLANGEKT 93
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 33.9 bits (74), Expect = 0.032
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRR--KMASDN--PKMHNSEISKRLGAQ--WKDLSESEKRPFIDEAK 627
K+P +AF+++ + R K+ + P+ ++ + + A WK+L+E +K+PFID++K
Sbjct: 148 KKPSSAFILFYKELRNNPKLRQELGIPEAISTLVEETQNASKAWKELAEDKKKPFIDKSK 207
Query: 628 RLRAVHMK 651
L+ + K
Sbjct: 208 ALKEQYDK 215
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 505 QRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYK 669
++R + +EI +LG W+ L K+P++DE RA + +Y+
Sbjct: 867 KQRVTGDPEARATKNEIRAKLGKTWRALDSLGKQPWVDEINARRANYSTRLEEYQ 921
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 30.3 bits (65), Expect = 0.39
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 505 QRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 645
+RR K +E +LG W+ L + K+P+IDE R +
Sbjct: 1141 KRRLTGDSTAKATINETRAKLGKTWRQLDDLGKKPWIDEIAAQREAY 1187
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 29.5 bits (63), Expect = 0.69
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 469 RPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE-AKRLRAVH 645
RP+ AF V++R + D+ + S +SK+ G+QW+ S+ P +DE AK + VH
Sbjct: 26 RPV-AFHVFTRKYDLNINRDSLQELASFVSKKCGSQWR----SQCEPLLDEIAKTWKRVH 80
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 29.1 bits (62), Expect = 0.91
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 484 FMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 612
F +S Q+ K+ ++ + + K L W +L+E EK+P+
Sbjct: 202 FNHFSSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPY 244
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 544 NSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDY 666
N+E +++ W LSESE+R + K MKE Y
Sbjct: 255 NTEEREQIREFWLSLSESERRSLVKVEKEAVLQKMKEQQKY 295
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 505 QRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV-HMKEHPDYKYRPR 681
+R +N + EI R W + ++ EAK +++ K+ + + PR
Sbjct: 671 ERDLKKGENIMKYGDEIRSRPARTWFQSEKDKQASKASEAKDKKSLAKRKKQMEKEEVPR 730
Query: 682 --RKTKTPGLKNKKNT 723
+KTK L NKK+T
Sbjct: 731 AYKKTKNDRLSNKKST 746
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 586 LSESEKRPFIDEAKRLRAVHMKEH-PDYKYRPRRKTKTPGLKNK 714
+SE+EK DEA+ R + K H Y Y R P LK+K
Sbjct: 517 VSEAEKYKAEDEAETSR-IQAKNHLESYAYSLRNSLDDPNLKDK 559
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 442 KNSNAERVKRPM---NAFMVWSRGQRRKMASDNPKMHNSEISKRL 567
+NS E+V R + N ++ G+R+K+AS++ K H S +L
Sbjct: 552 RNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSNKYHPIVSSNQL 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,150
Number of Sequences: 5004
Number of extensions: 54936
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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