Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O15
(906 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 161 9e-40
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 143 2e-34
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 143 2e-34
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 3e-30
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 5e-28
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 2e-27
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 117 2e-26
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 117 2e-26
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 116 2e-26
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 116 3e-26
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 113 2e-25
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 2e-24
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 106 3e-23
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 3e-23
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 105 4e-23
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 2e-21
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 6e-19
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 79 4e-15
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 5e-11
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 47 2e-05
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 44 2e-04
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 43 3e-04
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041) 38 0.008
SB_606| Best HMM Match : HMG_box (HMM E-Value=0.19) 38 0.008
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 38 0.011
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 38 0.011
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 37 0.019
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 37 0.019
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 35 0.079
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.079
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 34 0.18
SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.73
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 29 3.9
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 29 5.2
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 5.2
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07) 29 5.2
SB_1173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 161 bits (390), Expect = 9e-40
Identities = 73/93 (78%), Positives = 84/93 (90%)
Frame = +1
Query: 439 SKNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFID 618
+K ++A+RVKRPMNAFMVWSR +RRKMA DNPKMHNSEISKRLG++WK LSE EKRP+ID
Sbjct: 781 TKANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQEKRPYID 840
Query: 619 EAKRLRAVHMKEHPDYKYRPRRKTKTPGLKNKK 717
EA+RLRAVHMKEHPDYKYRPRRK+KT K+ K
Sbjct: 841 EARRLRAVHMKEHPDYKYRPRRKSKTLLKKDNK 873
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 143 bits (347), Expect = 2e-34
Identities = 60/80 (75%), Positives = 73/80 (91%)
Frame = +1
Query: 457 ERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLR 636
E VKRPMNAFMVWSR +RRK+A +NPKMHNSEISKRLG++WK L++ +K+PF++EAK+LR
Sbjct: 325 EHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAKKLR 384
Query: 637 AVHMKEHPDYKYRPRRKTKT 696
A HMKEHPDYKYRPRRK K+
Sbjct: 385 AQHMKEHPDYKYRPRRKPKS 404
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 143 bits (347), Expect = 2e-34
Identities = 60/80 (75%), Positives = 73/80 (91%)
Frame = +1
Query: 457 ERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLR 636
E VKRPMNAFMVWSR +RRK+A +NPKMHNSEISKRLG++WK L++ +K+PF++EAK+LR
Sbjct: 8 EHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAKKLR 67
Query: 637 AVHMKEHPDYKYRPRRKTKT 696
A HMKEHPDYKYRPRRK K+
Sbjct: 68 AQHMKEHPDYKYRPRRKPKS 87
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 129 bits (312), Expect = 3e-30
Identities = 56/82 (68%), Positives = 71/82 (86%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 621
K S+ + VKRPMNAFMVWS+ +RRKMA ++P MHN+EISKRLG +WK LSESEKRPF++E
Sbjct: 38 KKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSESEKRPFVEE 97
Query: 622 AKRLRAVHMKEHPDYKYRPRRK 687
++RLR HM+ +PDYKYRPR+K
Sbjct: 98 SERLRIRHMQAYPDYKYRPRKK 119
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 122 bits (293), Expect = 5e-28
Identities = 52/85 (61%), Positives = 70/85 (82%), Gaps = 1/85 (1%)
Frame = +1
Query: 457 ERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLR 636
+ +KRPMNA+MVWSR +RR++A + P+M NSEISKRLG +W L+ EK+P+++EAKRLR
Sbjct: 6 DHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSLTLDEKQPYVEEAKRLR 65
Query: 637 AVHMKEHPDYKYRPRRKTKT-PGLK 708
+H K+HPDYKY+P+RK KT P LK
Sbjct: 66 ELHKKDHPDYKYQPKRKPKTSPKLK 90
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 120 bits (289), Expect = 2e-27
Identities = 47/82 (57%), Positives = 69/82 (84%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 621
K+ ER+KRPMNAFMVW++ +RR++A NP++HN+E+SK LG W+ L+ ++KRPF+DE
Sbjct: 359 KDDETERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRALNSTQKRPFVDE 418
Query: 622 AKRLRAVHMKEHPDYKYRPRRK 687
A+RLR HM+++P+YKYRPRR+
Sbjct: 419 AERLRLQHMQDYPNYKYRPRRR 440
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 117 bits (281), Expect = 2e-26
Identities = 49/86 (56%), Positives = 65/86 (75%)
Frame = +1
Query: 448 SNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 627
S+ +KRPMNAFM+WS +RR++A++NPK+HNS+ISK LG +W+ L+ EK+ F EAK
Sbjct: 2 SSGSHIKRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEKQKFFAEAK 61
Query: 628 RLRAVHMKEHPDYKYRPRRKTKTPGL 705
L +HM EHPDYKYRPRR+ K L
Sbjct: 62 LLNELHMIEHPDYKYRPRRRVKKRSL 87
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 117 bits (281), Expect = 2e-26
Identities = 49/86 (56%), Positives = 65/86 (75%)
Frame = +1
Query: 448 SNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 627
S+ +KRPMNAFM+WS +RR++A++NPK+HNS+ISK LG +W+ L+ EK+ F EAK
Sbjct: 2 SSGSHIKRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEKQKFFAEAK 61
Query: 628 RLRAVHMKEHPDYKYRPRRKTKTPGL 705
L +HM EHPDYKYRPRR+ K L
Sbjct: 62 LLNELHMIEHPDYKYRPRRRVKKRSL 87
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 116 bits (280), Expect = 2e-26
Identities = 54/90 (60%), Positives = 68/90 (75%), Gaps = 1/90 (1%)
Frame = +1
Query: 457 ERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLR 636
+ +KRPMNAFMVWSR +RRK+A P M N EISK LGA+W LSE EKRPF+ EAKRLR
Sbjct: 7 QHIKRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEEEKRPFVTEAKRLR 66
Query: 637 AVHMKEHPDYKYRP-RRKTKTPGLKNKKNT 723
+H +++PDY Y+P RRK+KT K+ +T
Sbjct: 67 TIHNQKYPDYSYKPRRRKSKTVKSKDVYST 96
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 116 bits (279), Expect = 3e-26
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
VKRPMNAFMVW++ RRK+A P +HN+E+SK LG WK L++SEK+PFI+EA+RLR
Sbjct: 64 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLNDSEKKPFIEEAERLRIK 123
Query: 643 HMKEHPDYKYRPRRK 687
H +EHPDYKY+PRRK
Sbjct: 124 HKREHPDYKYQPRRK 138
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 113 bits (271), Expect = 2e-25
Identities = 44/75 (58%), Positives = 62/75 (82%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
VKRPMN+FM+W++ RRK A +NPK+HN+EISK LG W +L+ +KRPF+++A+RLR
Sbjct: 94 VKRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAERLRIR 153
Query: 643 HMKEHPDYKYRPRRK 687
HMKEHP+Y+Y P+R+
Sbjct: 154 HMKEHPNYRYTPKRR 168
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 109 bits (263), Expect = 2e-24
Identities = 45/79 (56%), Positives = 62/79 (78%)
Frame = +1
Query: 460 RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRA 639
+VKRPMN+FMVW++ RRK+A P +HN+E+SK LG W+ LS +EK+P++DEA RL
Sbjct: 110 KVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRMLSAAEKQPYVDEAARLDK 169
Query: 640 VHMKEHPDYKYRPRRKTKT 696
H ++HPDYKYRPRR+ K+
Sbjct: 170 RHKEDHPDYKYRPRRRQKS 188
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 106 bits (254), Expect = 3e-23
Identities = 44/82 (53%), Positives = 63/82 (76%)
Frame = +1
Query: 448 SNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 627
++ + VKRP+N+FMVW++ +RR M +NPKM N+EISK LG +W+ + ESEK P+ +EA
Sbjct: 5 ASQDHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPESEKLPYTEEAL 64
Query: 628 RLRAVHMKEHPDYKYRPRRKTK 693
RLR H +HP+Y+Y+PRRK K
Sbjct: 65 RLRRQHKVDHPNYRYKPRRKHK 86
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 106 bits (254), Expect = 3e-23
Identities = 52/132 (39%), Positives = 73/132 (55%)
Frame = +1
Query: 451 NAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKR 630
+A VKRPMNAFMVWS+ +RR + + P+MHNSEISK LG +WK + + K+P+I++AK
Sbjct: 5 DANHVKRPMNAFMVWSKERRRIKSQECPRMHNSEISKILGCEWKAMKDELKQPYIEKAKE 64
Query: 631 LRAVHMKEHPDYKYRPRRKTKTPGLKNKKNTHSXXXXXXXXXXXXXVSRANGTTTPRRLS 810
L+A H +E+P YKY+PRR+ L K + A G TP +
Sbjct: 65 LQAQHSRENPGYKYKPRRRKPKQTLLKKAAYPFPYTSTEMAPHAMKMGYAGGMPTPESMY 124
Query: 811 NDTKRLHAQRIY 846
+ Q Y
Sbjct: 125 QQFYPMQGQPAY 136
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 105 bits (253), Expect = 4e-23
Identities = 40/83 (48%), Positives = 68/83 (81%)
Frame = +1
Query: 448 SNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 627
S++E++KRP+NAF++WS+ +RR +A++NP+MHN +IS++LG +W+ L+E EK + +EAK
Sbjct: 14 SSSEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEEEKAYYFEEAK 73
Query: 628 RLRAVHMKEHPDYKYRPRRKTKT 696
+L+ H + +P YKY+PR++ KT
Sbjct: 74 KLKEEHKERYPHYKYQPRKRDKT 96
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 99 bits (238), Expect = 2e-21
Identities = 44/84 (52%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Frame = +1
Query: 448 SNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 627
S VKRPMN FMVWSR +R ++ +NP ++N+ +SK LG WK LS EK P+I++AK
Sbjct: 3 SKKTHVKRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKLSVEEKEPYIEKAK 62
Query: 628 RLRAVHMKEHPDYKYRP-RRKTKT 696
L +H ++HPDYKY+P RRK+K+
Sbjct: 63 HLTEMHKEKHPDYKYQPKRRKSKS 86
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 91.9 bits (218), Expect = 6e-19
Identities = 39/80 (48%), Positives = 55/80 (68%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 621
+ N +VKRPMNAFM+W+R R +A P+ +N+EIS RLG W DLS +++P+ DE
Sbjct: 94 RQENNAKVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQKPYFDE 153
Query: 622 AKRLRAVHMKEHPDYKYRPR 681
A RL+ H EHP++ Y+PR
Sbjct: 154 ATRLKDKHKAEHPNWVYQPR 173
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 79.4 bits (187), Expect = 4e-15
Identities = 38/58 (65%), Positives = 43/58 (74%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLR 636
VK PMNAFMV SRG+R+ AS NP MHNSE SK LG +WK L+ EK PFI E KRL+
Sbjct: 9 VKSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKMLTSEEKDPFIAEPKRLQ 66
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 65.7 bits (153), Expect = 5e-11
Identities = 28/85 (32%), Positives = 49/85 (57%)
Frame = +1
Query: 445 NSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEA 624
+ + + ++RPMNAFM++S+ R + +P N +SK LG W L EK+ + A
Sbjct: 510 DDSKDHIRRPMNAFMIFSKRHRALVHQKHPHQDNRTVSKILGEWWYALGPEEKQSYNALA 569
Query: 625 KRLRAVHMKEHPDYKYRPRRKTKTP 699
+++ H K HPD+K+ + + K+P
Sbjct: 570 AQVKEAHFKAHPDWKWCTKDRKKSP 594
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/68 (29%), Positives = 45/68 (66%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 645
K P+ ++ + QR K+ S++P++ E++K LGA+W +S+ +K+ ++D+A+R + +
Sbjct: 145 KAPLTGYVQFLNEQREKVRSEHPELPFPEVTKILGAEWSKMSQDDKQRYLDDAERDKERY 204
Query: 646 MKEHPDYK 669
+ E +Y+
Sbjct: 205 IIELENYQ 212
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 47.2 bits (107), Expect = 2e-05
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSES---EKRPF 612
K + KR M+A+M+W R+++ NP + +E+SK G WK+L++ E++
Sbjct: 535 KKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKAA 594
Query: 613 IDEAKRLRAVHMKEHPDYKYRPRR----KTKTPGLKNKK 717
I++ K ++ MKE+ + K + K K+P K K
Sbjct: 595 IEKQKYVQ--RMKEYNENKKNDKEESSPKKKSPSKKASK 631
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
V+ P++AF +W+ R+ + NP + ++ K+L +WK++ E K+ +I + K
Sbjct: 227 VEPPLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEKGKKTWIKKEKTEMRK 286
Query: 643 HMKEHPDYKYRP 678
+ K+ + P
Sbjct: 287 YQKKIKEISVTP 298
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 43.2 bits (97), Expect = 3e-04
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPK----MHNSEISKRLGAQWKDLSESEKRP 609
K + K+P NAF ++ + QR M D+ M + E++K L +W +L EK+
Sbjct: 48 KEKDPNAPKKPANAFFMFCQQQRTVMQEDHKDATAVMGHHELTKSLAKEWNNLLPDEKKV 107
Query: 610 FIDEAKRLR---AVHMKEHPDYKYRPRRKTKTPGLKNKK 717
+ + +R + + MK++ K P +K K P K +K
Sbjct: 108 YYEMYERDKERYELEMKQYSSDK-PPSKKQKDPSSKKRK 145
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 39.9 bits (89), Expect = 0.003
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSR---GQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 612
K + + K P+ ++ + R +R + +P + EI+K LG +W L EK+ F
Sbjct: 187 KEYDLNKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSLLPEEKQKF 246
Query: 613 IDEAKRLRAVHMKEHPDYK 669
+DEA+ + +++E Y+
Sbjct: 247 LDEAEEDKKRYVEELRAYQ 265
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 38.3 bits (85), Expect = 0.008
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 645
KRP AF + + K+ +NP + ++EI K L QW +L S K + E ++
Sbjct: 307 KRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANLEPSVKECYRKEYQQ----D 362
Query: 646 MKE-HPDYKYRPRRKTKTPGLKNKKN 720
M+E YK PR+ + L ++N
Sbjct: 363 MEEFRAPYKKLPRKPPRHFSLFMREN 388
Score = 35.9 bits (79), Expect = 0.045
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEK 603
++P F ++ R K+ ++N M N +I + LGA+W++L SE+
Sbjct: 375 RKPPRHFSLFMRENFAKIKAENQGMSNPDIMRELGAKWRNLPFSER 420
>SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041)
Length = 169
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +1
Query: 535 KMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPR 681
++ + IS LG +WK + + E++ ++ EAK+L H K +PD R R
Sbjct: 106 EIEHRAISVILGDKWKSMKQEERKQYVMEAKQLAEEHKKVNPDCWKRKR 154
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHNSE 552
KRPMNAFM++++ R ++ +P NS+
Sbjct: 32 KRPMNAFMLFAKRYRLEITQAHPGKDNSQ 60
>SB_606| Best HMM Match : HMG_box (HMM E-Value=0.19)
Length = 159
Score = 38.3 bits (85), Expect = 0.008
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 544 NSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKT 690
N +IS LG W +SE KRPF + A+ L +P++KY +T
Sbjct: 4 NRKISIMLGDYWNCMSEGHKRPFQEMARELMRKTKATYPEFKYSALEQT 52
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 37.9 bits (84), Expect = 0.011
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRL 633
++P+ +M +SR ++ + NP +I K +G W+DL ++EK+ +EA +L
Sbjct: 29 EKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDDAEKQQEYNEAVKL 84
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 37.9 bits (84), Expect = 0.011
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQRRKMA-----SDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 627
VKR +A++ ++ R K+ S P +E++K G +WK L++ +K+P++ +A+
Sbjct: 496 VKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPYVAKAE 555
Query: 628 RLRAVHMKE--HPDYKYRPRRKTKTP 699
+ ++KE D K P + + P
Sbjct: 556 ADKQRYLKESGKNDPKKDPDKPKRPP 581
Score = 33.1 bits (72), Expect = 0.32
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 457 ERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF-IDEAK 627
++ KRP A+ ++ R++MA + +I G +W+++S+ +K+P+ I EA+
Sbjct: 575 DKPKRPPTAYFLFLAAFRKEMAGKALE-DGKKIPSLAGERWREMSDEDKKPYTIQEAE 631
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 37.1 bits (82), Expect = 0.019
Identities = 18/82 (21%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 469 RPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHM 648
+P++A+ ++ + + + NP EI+K +G W++L E +K+ + + + +A +
Sbjct: 927 KPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEEQKKVYHCKHETAKAEYQ 986
Query: 649 KEHPDYKYRPRR-KTKTPGLKN 711
K + + + K K P L++
Sbjct: 987 KAMDELISKQKEPKAKLPKLES 1008
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 37.1 bits (82), Expect = 0.019
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 445 NSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEA 624
+ A+R + N F +W R ++ +NP + + ++ K WK L EK+ + ++A
Sbjct: 323 DEKADRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKVWNEKA 382
Query: 625 K 627
K
Sbjct: 383 K 383
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 35.1 bits (77), Expect = 0.079
Identities = 15/63 (23%), Positives = 36/63 (57%)
Frame = +1
Query: 439 SKNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFID 618
S +S + KR + ++++S R + ++P+ EIS+ +G +W++ S + K + +
Sbjct: 27 STDSGKKTKKRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYEN 86
Query: 619 EAK 627
+A+
Sbjct: 87 KAQ 89
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 35.1 bits (77), Expect = 0.079
Identities = 15/63 (23%), Positives = 36/63 (57%)
Frame = +1
Query: 439 SKNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFID 618
S +S + KR + ++++S R + ++P+ EIS+ +G +W++ S + K + +
Sbjct: 1260 STDSGKKTKKRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYEN 1319
Query: 619 EAK 627
+A+
Sbjct: 1320 KAQ 1322
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 33.9 bits (74), Expect = 0.18
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 445 NSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKR 606
+ A+R + N F +W R ++ +NP + + ++ K WK L EK+
Sbjct: 30 DEKADRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKK 83
>SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 31.9 bits (69), Expect = 0.73
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -1
Query: 315 WQSHHAAERTQRPIAVLECMVRRHRCVKAAAFEIRLHRQHVVFLRRVQLADS 160
W + HAA+ R L+ +R R V++ ++R R+ +++RR Q+A S
Sbjct: 166 WNNCHAAQEALRLAWGLKVDRKRRRSVRSKGIDLRERRKQPLWMRRHQIARS 217
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 484 FMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDL--SESEKRPFIDEAKRLRAVHMKEH 657
++ +++ R +AS NP + ++ I+ LGA W+D ++ P + + + K+
Sbjct: 299 YVKFTKAMRPAVASANPGVAHTRINALLGAMWQDFKTAQGPSSPASRSSSKKSSAKKKKA 358
Query: 658 PDYKYRPRRKTKTPG 702
+ K KT G
Sbjct: 359 QSKNKKAETKVKTRG 373
>SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
Length = 1311
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQR 510
VKRPMN+FM+W++ R
Sbjct: 1295 VKRPMNSFMIWAKVMR 1310
>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 820
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 511 RKMASDN--PKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEH 657
R+MA DN P + +S+++ A WK EKRP +++ A + H
Sbjct: 608 REMAQDNSTPGVTEKSLSRKI-ADWKHRETKEKRPTASKSETKAATNGASH 657
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 520 ASDNPKMHNSEI-SKRLGAQWKDLSESEKRPFIDEAKRLR 636
A+DN ++ SK GA+ KDL +S K+P DE + L+
Sbjct: 1768 AADNDRLERELAKSKEDGAKLKDLEDSGKQPENDETRALQ 1807
>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
Length = 711
Score = 29.1 bits (62), Expect = 5.2
Identities = 20/74 (27%), Positives = 29/74 (39%)
Frame = -3
Query: 289 HPATHSRAGVHGAAAPLREGCRL*DPSPSSACRLPAARTACRFLRSQCTTKNYRSVTWTR 110
HP SR G EG R D + + LP + C F + + +Y VT
Sbjct: 426 HPTNMSRTLPEGQDQCYFEGRRAYDNYTNMSRTLPEGQGQCYFEGKEISRSSYEHVTNLA 485
Query: 109 GGARVIVTLHRTVE 68
GAR ++ R +
Sbjct: 486 RGARPVLLRRRAYD 499
>SB_1173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = -2
Query: 185 CGAYSLPIPSFT-VHNEKLSVGHM 117
CGAYSLPI S T ++++++ +G M
Sbjct: 9 CGAYSLPIRSATLINDQQMKLGKM 32
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,737,127
Number of Sequences: 59808
Number of extensions: 482021
Number of successful extensions: 1459
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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