Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O15
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 164 7e-41
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 163 2e-40
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 118 6e-27
U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian ... 110 2e-24
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 109 2e-24
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 109 2e-24
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 109 2e-24
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 109 2e-24
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 109 2e-24
U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical pr... 91 1e-18
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 64 2e-10
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 64 2e-10
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 64 2e-10
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 57 2e-08
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 55 6e-08
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 51 1e-06
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 40 0.002
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 37 0.017
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 37 0.017
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 37 0.017
U70852-12|AAK29819.1| 204|Caenorhabditis elegans Hmg protein 5 ... 35 0.092
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 35 0.092
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 35 0.092
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 35 0.092
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 35 0.092
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 32 0.65
Z82264-5|CAB05156.1| 404|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81461-4|CAB62798.1| 256|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81038-11|CAB02761.1| 230|Caenorhabditis elegans Hypothetical p... 29 6.0
Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical pr... 28 8.0
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 164 bits (399), Expect = 7e-41
Identities = 73/89 (82%), Positives = 80/89 (89%)
Frame = +1
Query: 448 SNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 627
++ + VKRPMNAFMVWSRGQRRKMA DNPKMHNSEISKRLGA+WK LSE EKRPFIDEAK
Sbjct: 43 NSLDHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAK 102
Query: 628 RLRAVHMKEHPDYKYRPRRKTKTPGLKNK 714
RLRA+HMKEHPDYKYRPRRK K+ LK +
Sbjct: 103 RLRALHMKEHPDYKYRPRRKPKSSNLKQQ 131
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 163 bits (396), Expect = 2e-40
Identities = 73/87 (83%), Positives = 79/87 (90%)
Frame = +1
Query: 451 NAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKR 630
N +RVKRPMNAFMVWSRGQR+KMA +NPKMHNSEISKRLG +WK LSE EKRPFIDEAKR
Sbjct: 56 NDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEKRPFIDEAKR 115
Query: 631 LRAVHMKEHPDYKYRPRRKTKTPGLKN 711
LRA+HMKEHPDYKYRPRRKTK+ KN
Sbjct: 116 LRAIHMKEHPDYKYRPRRKTKSINKKN 142
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 118 bits (284), Expect = 6e-27
Identities = 50/84 (59%), Positives = 68/84 (80%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 621
K+SN +KRPMNAFMVWS+ +RRK+ P MHN+EISK+LG++W+ L++ EK PF+ E
Sbjct: 88 KSSN--HIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAE 145
Query: 622 AKRLRAVHMKEHPDYKYRPRRKTK 693
A+RLR HM+E+PDYKY+PR+K K
Sbjct: 146 AERLRVCHMQEYPDYKYKPRKKPK 169
>U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform b protein.
Length = 199
Score = 110 bits (264), Expect = 2e-24
Identities = 49/58 (84%), Positives = 52/58 (89%)
Frame = +1
Query: 538 MHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTPGLKN 711
MHNSEISKRLG +WK LSE EKRPFIDEAKRLRA+HMKEHPDYKYRPRRKTK+ KN
Sbjct: 1 MHNSEISKRLGTEWKMLSEQEKRPFIDEAKRLRAIHMKEHPDYKYRPRRKTKSINKKN 58
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 109 bits (263), Expect = 2e-24
Identities = 48/85 (56%), Positives = 64/85 (75%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
+KRPMNAFMVW+R +RRK+ P MHNS ISK LG++WK +S SEK+P+ +E RL +
Sbjct: 178 IKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKL 237
Query: 643 HMKEHPDYKYRPRRKTKTPGLKNKK 717
HM++HPDY+YRPR K +T + KK
Sbjct: 238 HMEQHPDYRYRPRPK-RTCVIDGKK 261
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 109 bits (263), Expect = 2e-24
Identities = 48/85 (56%), Positives = 64/85 (75%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
+KRPMNAFMVW+R +RRK+ P MHNS ISK LG++WK +S SEK+P+ +E RL +
Sbjct: 175 IKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKL 234
Query: 643 HMKEHPDYKYRPRRKTKTPGLKNKK 717
HM++HPDY+YRPR K +T + KK
Sbjct: 235 HMEQHPDYRYRPRPK-RTCVIDGKK 258
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 109 bits (263), Expect = 2e-24
Identities = 48/85 (56%), Positives = 64/85 (75%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
+KRPMNAFMVW+R +RRK+ P MHNS ISK LG++WK +S SEK+P+ +E RL +
Sbjct: 281 IKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKL 340
Query: 643 HMKEHPDYKYRPRRKTKTPGLKNKK 717
HM++HPDY+YRPR K +T + KK
Sbjct: 341 HMEQHPDYRYRPRPK-RTCVIDGKK 364
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 109 bits (263), Expect = 2e-24
Identities = 48/85 (56%), Positives = 64/85 (75%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
+KRPMNAFMVW+R +RRK+ P MHNS ISK LG++WK +S SEK+P+ +E RL +
Sbjct: 329 IKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKL 388
Query: 643 HMKEHPDYKYRPRRKTKTPGLKNKK 717
HM++HPDY+YRPR K +T + KK
Sbjct: 389 HMEQHPDYRYRPRPK-RTCVIDGKK 412
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 109 bits (263), Expect = 2e-24
Identities = 48/85 (56%), Positives = 64/85 (75%)
Frame = +1
Query: 463 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
+KRPMNAFMVW+R +RRK+ P MHNS ISK LG++WK +S SEK+P+ +E RL +
Sbjct: 329 IKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKL 388
Query: 643 HMKEHPDYKYRPRRKTKTPGLKNKK 717
HM++HPDY+YRPR K +T + KK
Sbjct: 389 HMEQHPDYRYRPRPK-RTCVIDGKK 412
>U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical
protein C12D12.5 protein.
Length = 241
Score = 91.1 bits (216), Expect = 1e-18
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 17/101 (16%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMV-----------------WSRGQRRKMASDNPKMHNSEISKRLG 570
+ + R+KRPMNAFMV WS+ +R+++A+ K HNS+ISK LG
Sbjct: 78 RTAREPRIKRPMNAFMVINVQTWKIRKSNDYIKVWSQQRRQQIAATGQKFHNSDISKMLG 137
Query: 571 AQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTK 693
A+W+ + E EK PF++ AK+LR H HPDY YRPRR+ +
Sbjct: 138 AEWRKMEEHEKVPFVERAKQLREEHFNAHPDYVYRPRRRKR 178
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 63.7 bits (148), Expect = 2e-10
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +1
Query: 445 NSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEA 624
++N V+RPMNAFM++S+ R + P N +SK LG W L+ +K + A
Sbjct: 837 SANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLA 896
Query: 625 KRLRAVHMKEHPDYKYRPRRK 687
+++ H K HPD+K+ + K
Sbjct: 897 TQVKEAHFKAHPDWKWSTKEK 917
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 63.7 bits (148), Expect = 2e-10
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +1
Query: 445 NSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEA 624
++N V+RPMNAFM++S+ R + P N +SK LG W L+ +K + A
Sbjct: 837 SANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLA 896
Query: 625 KRLRAVHMKEHPDYKYRPRRK 687
+++ H K HPD+K+ + K
Sbjct: 897 TQVKEAHFKAHPDWKWSTKEK 917
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 63.7 bits (148), Expect = 2e-10
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +1
Query: 445 NSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEA 624
++N V+RPMNAFM++S+ R + P N +SK LG W L+ +K + A
Sbjct: 72 SANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLA 131
Query: 625 KRLRAVHMKEHPDYKYRPRRK 687
+++ H K HPD+K+ + K
Sbjct: 132 TQVKEAHFKAHPDWKWSTKEK 152
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASD--NPKMHNSEISKRLGAQWKDLSESEKRPFI 615
K + VK+P+NAFM + + R+ + + N + ++E++K LG +W DLS+ E+ +
Sbjct: 184 KAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYF 243
Query: 616 DEAKRLRAVHMKEHPDYKYRPR---RKTKTPGLKNK 714
+ AK+ + H + +P++ R K KT ++K
Sbjct: 244 EMAKKDKETHKERYPEWSARENYAVNKKKTKKRRDK 279
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 55.2 bits (127), Expect = 6e-08
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASD---NPKMHNSEISKRLGAQWKDLSESEKRPF 612
K + VK+P+NAF VW + RK + N + ++E++K LG +W DLS+ E+ +
Sbjct: 185 KAKKDDHVKKPLNAF-VWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKY 243
Query: 613 IDEAKRLRAVHMKEHPDYKYRPR---RKTKTPGLKNK 714
+ AK+ + H + +P++ R K KT ++K
Sbjct: 244 FEMAKKDKETHKERYPEWSARENYAVNKKKTKKRRDK 280
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/94 (26%), Positives = 46/94 (48%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 621
K + KR A+++W R M D + +++K+ GA+WK +S +K+ + D+
Sbjct: 554 KTKDPNEPKRATTAYIIWFNANRNSMKEDGDTL--GDVAKKAGAKWKSMSADDKKEWNDK 611
Query: 622 AKRLRAVHMKEHPDYKYRPRRKTKTPGLKNKKNT 723
A + +A + E +YK K G KK++
Sbjct: 612 AAQDKARYEAEMKEYKKNGGGVEKASGPSTKKSS 645
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 645
+RP+ +M +SR K+ ++NP+ +I K +G W DL + EK + E + +A +
Sbjct: 27 ERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEKADY 86
Query: 646 MKE 654
K+
Sbjct: 87 EKQ 89
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 37.1 bits (82), Expect = 0.017
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +1
Query: 478 NAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 612
+ ++++S R+++ +NP E+SK +G +WK LSE +K+ +
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 1498
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 37.1 bits (82), Expect = 0.017
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +1
Query: 478 NAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 612
+ ++++S R+++ +NP E+SK +G +WK LSE +K+ +
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 1498
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 37.1 bits (82), Expect = 0.017
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +1
Query: 478 NAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 612
+ ++++S R+++ +NP E+SK +G +WK LSE +K+ +
Sbjct: 84 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 128
>U70852-12|AAK29819.1| 204|Caenorhabditis elegans Hmg protein 5
protein.
Length = 204
Score = 34.7 bits (76), Expect = 0.092
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 538 MHNSEISKRLGAQWKDLSESEKRPFIDEAKRLR 636
M + E K AQWK ++S+K+ + DEAK+L+
Sbjct: 152 MESKEKMKEAVAQWKAFTDSQKKKYTDEAKKLK 184
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = +1
Query: 508 RRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRK 687
+ ++ M +++ K L +WK LS SEK + + +K A + + ++K
Sbjct: 42 KENFKANTSDMKRTDLMKELSGKWKALSISEKDKYTELSKNYNAQKLDDFMKLSTEEQKK 101
Query: 688 TKTPGLKNKK 717
K KK
Sbjct: 102 L-VDSAKEKK 110
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 34.7 bits (76), Expect = 0.092
Identities = 16/68 (23%), Positives = 37/68 (54%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 645
KR ++AF +S+ +R ++ + +P ++++ LG WK + + K + +A+ + +
Sbjct: 135 KRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRY 194
Query: 646 MKEHPDYK 669
E +YK
Sbjct: 195 ADEMRNYK 202
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 460 RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKR 630
R K F V + K N + +EISK+ +WK + + EKR F + A++
Sbjct: 45 RGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQK 101
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 34.7 bits (76), Expect = 0.092
Identities = 16/68 (23%), Positives = 37/68 (54%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 645
KR ++AF +S+ +R ++ + +P ++++ LG WK + + K + +A+ + +
Sbjct: 134 KRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRY 193
Query: 646 MKEHPDYK 669
E +YK
Sbjct: 194 ADEMRNYK 201
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 460 RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKR 630
R K F V + K N + +EISK+ +WK + + EKR F + A++
Sbjct: 46 RGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQK 102
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 34.7 bits (76), Expect = 0.092
Identities = 16/68 (23%), Positives = 37/68 (54%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 645
KR ++AF +S+ +R ++ + +P ++++ LG WK + + K + +A+ + +
Sbjct: 136 KRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRY 195
Query: 646 MKEHPDYK 669
E +YK
Sbjct: 196 ADEMRNYK 203
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 460 RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKR 630
R K F V + K N + +EISK+ +WK + + EKR F + A++
Sbjct: 46 RGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQK 102
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 34.7 bits (76), Expect = 0.092
Identities = 16/68 (23%), Positives = 37/68 (54%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 645
KR ++AF +S+ +R ++ + +P ++++ LG WK + + K + +A+ + +
Sbjct: 136 KRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRY 195
Query: 646 MKEHPDYK 669
E +YK
Sbjct: 196 ADEMRNYK 203
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 460 RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKR 630
R K F V + K N + +EISK+ +WK + + EKR F + A++
Sbjct: 46 RGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQK 102
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 31.9 bits (69), Expect = 0.65
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 784 GTTTPRRLSNDTKRLHAQRIYDARPQXRINNKHMDILA 897
G++TPR L++ K H QR+YDA+ + N H D A
Sbjct: 80 GSSTPRTLAHLDKIPHKQRVYDAKIPKK-NTTHSDFKA 116
>Z82264-5|CAB05156.1| 404|Caenorhabditis elegans Hypothetical
protein C49C3.11 protein.
Length = 404
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 490 VWSRGQRRKMASDNPKMHNSEISKRLGAQWKD 585
+W RRK D ++ +E SK L QW D
Sbjct: 270 IWVGAYRRKACWDKKNLNKTECSKELQYQWTD 301
>Z81461-4|CAB62798.1| 256|Caenorhabditis elegans Hypothetical
protein C04F12.6 protein.
Length = 256
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 153 ERRNRQAVRAAGRRHADDGDGSQRRQPSRNGAAAPCTPA 269
E + + + G + + +GS+ R PS G+AAP PA
Sbjct: 37 EGESTSSSKGNGAKTPEGKEGSEARTPSAAGSAAPTAPA 75
>Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical
protein W02D9.3 protein.
Length = 386
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 511 RKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYK 669
R+ + M EI+ L A W+ L+ E+ PF A + +++ +YK
Sbjct: 141 RRASYSKAVMSQREINISLAADWQKLTAEERIPFQQRADEEKVKYLELMEEYK 193
>Z81038-11|CAB02761.1| 230|Caenorhabditis elegans Hypothetical
protein C25A1.2 protein.
Length = 230
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 156 RRNRQAVRAAGRRHADDGDGSQRRQPSRNGAAAPCTPARLWVAGCARR 299
RR ++ VR +DGD S + + P P LW CA R
Sbjct: 168 RRAQRKVRRHMGLQVEDGDSSDEEGSPGSDPSPPIFPTALWNFNCAPR 215
>Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical
protein F47G4.6 protein.
Length = 128
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = +1
Query: 469 RPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHM 648
R +A+ ++ R ++ P +IS+++ QW L+E EK+ + ++ R +
Sbjct: 51 RSTSAYALFFRERQSLEKRAAPYATFGQISQKIARQWDSLTEEEKKAYKQRCEKNRKTSI 110
Query: 649 KEHPDYKYR 675
+ K R
Sbjct: 111 ANAVEEKAR 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,649,677
Number of Sequences: 27780
Number of extensions: 327743
Number of successful extensions: 1024
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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