Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O15
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   2.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.1  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 782 TAQQPRDVYQMTPNGYMPNGYMMHDPXCVSTTSIWISS 895
           T Q+P+DV +    G    G M+H P   S + +++SS
Sbjct: 359 TLQRPQDVDKYPAEGLEMKGQMVHCPE--SDSILFVSS 394


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +1

Query: 187 EDDMLTMETDLKGGSLHATVPPHHALQHGY 276
           ED+ L    +L         P HH + HG+
Sbjct: 394 EDNALASHNNLLNNVYSTPGPHHHTMGHGH 423


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 752  PPKAQRSAAPTAQQPRDVYQMTPNGY---MPNGYMMH 853
            PP+  R AA T+Q  +  +Q  PN +   +  GY +H
Sbjct: 1114 PPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGYKLH 1150


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
 Frame = -3

Query: 214 PSPSSACRLPAARTACRFLRSQ----CTTKNYRSVTW 116
           PSP+  C      TA     SQ    C T NY +  W
Sbjct: 745 PSPAEQCASTTTITARSPQGSQGLLQCATSNYSTTRW 781


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 752  PPKAQRSAAPTAQQPRDVYQMTPNGY---MPNGYMMH 853
            PP+  R AA T+Q  +  +Q  PN +   +  GY +H
Sbjct: 1110 PPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGYKLH 1146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,893
Number of Sequences: 438
Number of extensions: 3755
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)