Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O15
(906 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 54 1e-07
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 50 2e-06
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 48 6e-06
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 46 3e-05
At3g28730.1 68416.m03587 structure-specific recognition protein ... 46 3e-05
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 44 2e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 42 4e-04
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 39 0.004
At3g13350.1 68416.m01680 high mobility group (HMG1/2) family pro... 31 0.79
At5g56990.1 68418.m07113 expressed protein ; expression support... 31 1.4
At5g23590.1 68418.m02768 DNAJ heat shock N-terminal domain-conta... 30 1.8
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 29 3.2
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 29 3.2
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 29 4.2
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 29 4.2
At3g01120.1 68416.m00016 cystathionine gamma-synthase, chloropla... 29 5.6
At5g37350.2 68418.m04487 RIO1 family protein similar to extragen... 28 9.8
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 28 9.8
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 28 9.8
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Frame = +1
Query: 442 KNSNAE--RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFI 615
KN N + + K+P +++ ++S+ +R+K+ + P +N+ ++ + +WK+LSE EK+ +
Sbjct: 370 KNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYN 429
Query: 616 DEAKRLRAVHMKEHPDYKYRPRRKTKT 696
+A +L + KE Y + T +
Sbjct: 430 GKAAKLMEAYKKEVEAYNKKSAATTSS 456
Score = 50.0 bits (114), Expect = 2e-06
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 612
K + KRP +++++W + Q ++ +NP+ E S LGA+WK LS +K+P+
Sbjct: 131 KKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPY 187
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/76 (27%), Positives = 45/76 (59%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 621
K + + K P++AF+V++ +R + +N + E++K G +WK+LS+ +K P+
Sbjct: 248 KEKDPLKPKHPVSAFLVYANERRAALREENKSV--VEVAKITGEEWKNLSDKKKAPYEKV 305
Query: 622 AKRLRAVHMKEHPDYK 669
AK+ + +++ +YK
Sbjct: 306 AKKNKETYLQAMEEYK 321
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/68 (29%), Positives = 44/68 (64%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 645
K+P++A+++++ +R + +N + E++K G +WK+LSE +K P+ AK+ + ++
Sbjct: 247 KQPISAYLIYANERRAALKGENKSV--IEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIY 304
Query: 646 MKEHPDYK 669
++E YK
Sbjct: 305 LQEMEGYK 312
Score = 48.0 bits (109), Expect = 9e-06
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = +1
Query: 442 KNSNAE--RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFI 615
KN N + + K+P +++ ++ + R+ + ++P ++NS ++ + +W +L E EK+ +
Sbjct: 363 KNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYN 422
Query: 616 DEAKRLRAVHMKEHPDYKYRPRRKTKT 696
+A L + KE +Y KTKT
Sbjct: 423 SKAAELMEAYKKEVEEY-----NKTKT 444
Score = 46.4 bits (105), Expect = 3e-05
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 612
K + KRP +++W + ++ NP+ E S LGA+WK +S EK+P+
Sbjct: 122 KKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPY 178
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 48.4 bits (110), Expect = 6e-06
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHN-SEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
KRP +AF V+ R +NPK + + + K G +WK LS+SEK P++ +A++ +
Sbjct: 39 KRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVE 98
Query: 643 HMKEHPDY 666
+ K Y
Sbjct: 99 YEKNIKAY 106
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/69 (30%), Positives = 40/69 (57%)
Frame = +1
Query: 445 NSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEA 624
+S + + KRP+ AF ++ R+ S++ + +K G +WK L+E EK+ ++D+A
Sbjct: 109 SSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKA 168
Query: 625 KRLRAVHMK 651
L+A + K
Sbjct: 169 AELKAEYNK 177
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/76 (28%), Positives = 41/76 (53%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 621
K + KR M+ FM +S+ +R + ++P + E+ K LG +W+ +S +K P+ +
Sbjct: 555 KKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAK 614
Query: 622 AKRLRAVHMKEHPDYK 669
A+ + + E DYK
Sbjct: 615 AQVDKQRYKDEISDYK 630
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHN-SEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
KRP +AF V+ R ++PK + + + K G +WK LS+SEK P++ +A + +
Sbjct: 36 KRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVE 95
Query: 643 HMKEHPDY 666
+ K Y
Sbjct: 96 YEKNMKAY 103
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 466 KRPMNAFMVWSRGQRRKMASDNPKMHN-SEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 642
KRP +AF V+ R++ NP + + + K GA+WK +++ +K P++ +A+ +
Sbjct: 36 KRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTE 95
Query: 643 HMKEHPDYKYR 675
++K Y +
Sbjct: 96 YIKNVQQYNLK 106
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHN-SEISKRLGAQWKDLSESEKRPFID 618
K + R K+P + F V+ R++ NP + + + G +WK ++E E+ PF+
Sbjct: 27 KTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVA 86
Query: 619 EAKRLRAVHMKEHPDYKYRPRRKTKTPGLKNKK 717
+++ + + Y KT G K+
Sbjct: 87 KSQSKKTEYAVTMQQYNMELANGNKTTGDDEKQ 119
>At3g13350.1 68416.m01680 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 319
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 532 PKMHNSE--ISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYK 669
P+ H E I+K++G W +L+ESEK+ + D+ + + E +YK
Sbjct: 258 PEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYK 305
>At5g56990.1 68418.m07113 expressed protein ; expression supported
by MPSS
Length = 224
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 447 FQCRTC*TSDERIHGVVARA-TQENG 521
F+ C T+DE IHGV RA TQ NG
Sbjct: 80 FRLDVCSTNDEMIHGVALRAITQHNG 105
>At5g23590.1 68418.m02768 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|P39101
CAJ1 protein Saccharomyces cerevisiae; contains Pfam
profile PF00226 DnaJ domain
Length = 296
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 505 QRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYK 669
+RRKM SD + S S A+ D E R +E R+RA H K+ ++
Sbjct: 92 KRRKMMSDLEERERSAFSPNPSARAYDEEERIARKLKEEIDRIRARHAKKKSGFQ 146
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 559 KRLGAQWKDLSESEKRPFIDEAKRLRAVHMK 651
K + WK LS+ EKR D K L +V+ K
Sbjct: 108 KHVSEAWKFLSDKEKRAAYDRRKSLHSVYQK 138
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 559 KRLGAQWKDLSESEKRPFIDEAKRLRAVHMK 651
K + WK LS+ EKR D K L +V+ K
Sbjct: 108 KHVSEAWKFLSDKEKRAAYDRRKSLHSVYQK 138
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 621
K +N ++ + F V+ R+ +D E SK WK ++E EK+ ++D+
Sbjct: 55 KPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYLDK 114
Query: 622 A 624
A
Sbjct: 115 A 115
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 442 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 621
K +N ++ + F V+ R+ +D E SK WK ++E EK+ ++D+
Sbjct: 56 KPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYLDK 115
Query: 622 A 624
A
Sbjct: 116 A 116
>At3g01120.1 68416.m00016 cystathionine gamma-synthase, chloroplast
/ O-succinylhomoserine (Thiol)-lyase (CGS) identical to
SP|P55217 Cystathionine gamma-synthase, chloroplast
precursor (EC 4.2.99.9) (CGS) (O-succinylhomoserine
(Thiol)-lyase) {Arabidopsis thaliana}
Length = 563
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 540 HFRIIRSHFPALPARPHHECVHRTFNTFG 454
H ++ ++P LP+ P HE R FG
Sbjct: 449 HPKVSHVYYPGLPSHPEHELAKRQMTGFG 477
>At5g37350.2 68418.m04487 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 385
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 529 NPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTP-GL 705
N + E + G + ++ SE E P ++ K R H K+ + K R RKTKTP +
Sbjct: 315 NAEEEEEEEEEGSGEESEEESEKELGP--EDKKAARKEHKKKVKEEK-RESRKTKTPKSV 371
Query: 706 KNKK 717
K +K
Sbjct: 372 KKRK 375
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 529 NPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTP-GL 705
N + E + G + ++ SE E P ++ K R H K+ + K R RKTKTP +
Sbjct: 461 NAEEEEEEEEEGSGEESEEESEKELGP--EDKKAARKEHKKKVKEEK-RESRKTKTPKSV 517
Query: 706 KNKK 717
K +K
Sbjct: 518 KKRK 521
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +1
Query: 499 RGQRRKMASDNPKMHNSEISKRLGAQWKDLSE-SEKRPFIDEAKRLRAVHMKEHPDYKYR 675
+ + M DN K + G + E +EK D+ + + E DYK
Sbjct: 521 KDEANSMEYDNRKSTGRRRRSKKGKDKNNQGELNEKSSEADDTQYVN--RDMESQDYKKA 578
Query: 676 PRRKTKTPGLKNKKNT 723
PR K T G+K K T
Sbjct: 579 PRSKKSTRGMKTKGTT 594
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,659,575
Number of Sequences: 28952
Number of extensions: 307895
Number of successful extensions: 890
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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