Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O14
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.67 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   1.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.3  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 20/64 (31%), Positives = 23/64 (35%)
 Frame = -3

Query: 864 GEKGXXVFFXGGGGXXXGPXGGFXGGKXRCFXXSRGGFPPXRXGXIFXNFFXGGGXFGKX 685
           G +G      GG G   G  GGF GG+       RGG    R G        GG   G+ 
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65

Query: 684 PXXG 673
              G
Sbjct: 66  GAKG 69



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/72 (30%), Positives = 24/72 (33%)
 Frame = -3

Query: 864 GEKGXXVFFXGGGGXXXGPXGGFXGGKXRCFXXSRGGFPPXRXGXIFXNFFXGGGXFGKX 685
           G +G    F GG G   G  GG  GG        RGG    R G    +   GG   G  
Sbjct: 13  GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72

Query: 684 PXXGPFXGFGPF 649
               P    G F
Sbjct: 73  VIIEPHRHAGVF 84


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -3

Query: 879 PXXXQGEKGXXVFFXGGGGXXXGPXGGFXGGKXRCFXXSRGGFP 748
           P    G +G    F G GG   G  GGF GG+ R    +R G P
Sbjct: 443 PRTGGGSRGGRGGFGGRGGF--GGRGGFGGGRGRGRGGARSGNP 484


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +3

Query: 429 GGGXGXFXXXXKXPPPXGXGXXXXGXXXXXPPXXPXXPGFGGG 557
           GGG G F      PPP   G    G             GFGGG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 25/81 (30%), Positives = 27/81 (33%)
 Frame = -3

Query: 708 GGGXFGKXPXXGPFXGFGPFWXXXLKNFXXGXPXXXGXXXXPPXGXXKXXPPPQXXGXGX 529
           GGG  G  P  G F GFG F      +   G     G    P  G  +  P     G G 
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHG-----GFGGGP--GGFEGGPGGFGGGPGG 246

Query: 528 FXGGXGXGXXKXXPLXPGXGG 466
           F GG G           G GG
Sbjct: 247 FGGGLGGFGGGPGGFGGGPGG 267


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = +1

Query: 703  PPXKKIXKNXPPXXG-GETPXGXXKTPGFSPXKTPXWAPXXPTP 831
            PP  K     PP     E P     + G  P   P  AP  PTP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,915
Number of Sequences: 5004
Number of extensions: 16991
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)