Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O14
(893 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.025
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 31 0.95
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 30 2.2
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05) 30 2.9
SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28) 29 5.1
SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16) 29 5.1
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 29 6.7
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 28 8.9
SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_8730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_466| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 36.7 bits (81), Expect = 0.025
Identities = 37/124 (29%), Positives = 41/124 (33%), Gaps = 2/124 (1%)
Frame = -3
Query: 834 GGGGXXXGPXG-GFXGGKXRCFXXSRGGFPPXRXGXIFXNFFXGGGXFGKXPXXGPFXGF 658
GG G P G G GG GG PP G + G G G P G G
Sbjct: 486 GGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGG 545
Query: 657 GPFWXXXLKNFXXGXPXXXGXXXXPPXGXXKXXPPPQXXG-XGXFXGGXGXGXXKXXPLX 481
GP + + P PP G + PPP G G G G G P
Sbjct: 546 GPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQG---GGPPP 602
Query: 480 PGXG 469
PG G
Sbjct: 603 PGAG 606
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.5 bits (68), Expect = 0.95
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +1
Query: 682 GXFPKXPPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPP 834
G P PPP + PP GG P PG S AP P PP
Sbjct: 928 GNAPLPPPPPGGSAPSQPPPPGGNAPP-PPPPPGGSAPPPGGGAPPLPPPP 977
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +1
Query: 682 GXFPKXPPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPP 834
G P PPP PP GG P P P P P PP
Sbjct: 939 GSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPP 989
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -1
Query: 584 PXXGXXXPXPPPKXXGXGXXXGGXGXGPXXXXPXPXGXGXFXXXXKXPXPPP 429
P G P PPP G GG G P P G P PPP
Sbjct: 946 PPPGGNAPPPPPPPGGSAPPPGG---GAPPLPPPPGGSAPPPPPPPPPPPPP 994
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Frame = +2
Query: 662 PXXGPXXGXFPXXPPPXKKXKKXXPXRXGGKPPRE-XXKHRXFPPXKPPXG 811
P P G P PPP P GG P + PP PP G
Sbjct: 910 PSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPG 960
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/61 (29%), Positives = 19/61 (31%)
Frame = +1
Query: 682 GXFPKXPPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPPXKENXXPFF 861
G P PPP PP GG P G +P P P PP P
Sbjct: 917 GSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPP--PPGGSAPPPGGGAPPLP 974
Query: 862 P 864
P
Sbjct: 975 P 975
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = -2
Query: 583 PXGGXXXXXPPPXPGXXGFXGGXXXXXPKXKXPXPXGGGXFXXXKXXPXPPPXRXKKXK 407
P GG PPP G GG P P GG P PPP K K
Sbjct: 947 PPGGNAPPPPPPPGGSAPPPGGGAPPLPP-----PPGGSAPPPPPPPPPPPPPMRKLGK 1000
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 31.5 bits (68), Expect = 0.95
Identities = 20/60 (33%), Positives = 22/60 (36%)
Frame = -3
Query: 834 GGGGXXXGPXGGFXGGKXRCFXXSRGGFPPXRXGXIFXNFFXGGGXFGKXPXXGPFXGFG 655
GGG GP GG G + R RGG G +F GG F G G G
Sbjct: 203 GGGPMRGGPMGGRGGPRGRGMQRGRGGPRGGGRGGFGGDFGGDGGRFDASNMGGATGGTG 262
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +1
Query: 700 PPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPPXKENXXPFFPLGXXG 879
PPP N PP P G K G P P P P PP P G G
Sbjct: 1224 PPPMGHHMMNMPPPPPAMPPDGPPKFMGL-PPPPPGMRPMPPQPPFMPPPPRMQPPGPPG 1282
>SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 714 FXGGGXFGKXPXXGPFXGFGPF 649
F GGG +GK P PF G PF
Sbjct: 404 FEGGGAYGKTPATRPFYGSWPF 425
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = +1
Query: 682 GXFPKXPPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPP 834
G P PPP + + PP G P + G +P AP P PP
Sbjct: 323 GTAPPPPPPSRSSQRPPPPSRGAPPP----PSMGMAPPPVGGAAPPPPPPP 369
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +2
Query: 623 KKFFXKXXQXGPKPXXGPXXGXFPXXPPPXKKXKKXXPXRXGGKPPREXXKHRXFPPXKP 802
+K + G +P P G P PPP + P R G PP + PP P
Sbjct: 274 EKEYDTTASLGIQPPPPPSRGAAP--PPPSRGAPPPPPSR-GSAPPPPPARMGTAPPPPP 330
Query: 803 P 805
P
Sbjct: 331 P 331
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -3
Query: 834 GGGGXXXGPXGGFXGGKXR-CFXXSRGGFPPXRXGXIFXNFFXGG 703
GG G G GGF GG R RGG P R G F GG
Sbjct: 431 GGRGGFRGNRGGFRGGNERGQRRGGRGGHGPPRGGGGFSGPRGGG 475
>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
Length = 267
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 840 FXGGGGXXXGPXGGFXGGKXRCFXXSRGG 754
F GGGG G GGF GG F GG
Sbjct: 87 FGGGGGFGGGGGGGFGGGGGGGFGGGGGG 115
>SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)
Length = 815
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +2
Query: 659 KPXXGPXXGXFPXXPPPXKKX-KKXXPXRXGGKPPREXXKHRXFPPXKPP 805
+P G PP +K + GG PP +H FPP PP
Sbjct: 682 RPLSASDVGRAAINPPIKQKATSQGFVSPEGGSPPHNSGEHIDFPPPPPP 731
>SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 913
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 772 KTPGFSPXKTPXWAPXXPTPP 834
K P +P KTP AP P+PP
Sbjct: 820 KAPSGAPAKTPSMAPAAPSPP 840
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Frame = -3
Query: 828 GGXXXGPXGGFXGGKXRCFXXSRGGFP-------PXRXGXIFXNFFXGGGXFGKXPXXGP 670
GG G GG+ GG+ R GG G + + + GGG +G P G
Sbjct: 148 GGYRGGYRGGYRGGRDRGGGYGGGGEGGYGMGGGDYSGGCGYGSSYGGGGDYGGGPGYGG 207
Query: 669 FXGFGPF 649
G+G +
Sbjct: 208 GQGYGSY 214
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +1
Query: 691 PKXPPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPP 834
P PPP K PP G P T G P P P P PP
Sbjct: 365 PPPPPPTNKPPPPPPPTNGPPPPP--PPTNGPPPPPPPTNGPPPPPPP 410
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 831 GGGXXXGPXGGFXGGKXRCFXXSRGGFPPXRXGXIFXNFFXGGGXFG 691
GGG G GG+ G SRGG+ R G + GGG +G
Sbjct: 183 GGGGSQG--GGYRSGGGGYGGSSRGGYGGGRGGGGYGGGRGGGGGYG 227
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 831 GGGXXXGPXGGFXGGKXRCFXXSRGGFPPXRXGXIFXNFFXGGGXFG 691
GGG G GG+ G SRGG+ R G + GGG +G
Sbjct: 92 GGGGSQG--GGYRSGGGGYGGSSRGGYGGGRGGGGYGGGRGGGGSYG 136
>SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +1
Query: 691 PKXPPPXKKIXKNXPP--XXGGETPXGXXKTPGFSPXKTPXWAPXXPTPPXKENXXPFFP 864
P+ PPP I + PP G+ P PG P TP P P + P P
Sbjct: 30 PRAPPPNTAIPGDRPPNTPIPGDPPPN-IPIPGNPPPNTPIPGDPPPNTPIPGDPPPNTP 88
Query: 865 L 867
+
Sbjct: 89 I 89
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/59 (27%), Positives = 22/59 (37%)
Frame = +1
Query: 682 GXFPKXPPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPPXKENXXPF 858
G P PPP + P +T TPG+ P P + P PP + P+
Sbjct: 395 GILPGPPPPGPPMLNMAPSIPPWQT------TPGYIPPPPPGFPQFQPPPPPPPSDAPW 447
>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 901
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 708 GGGXFGKXPXXGPFXGFGPF 649
GGG +GK P PF G PF
Sbjct: 759 GGGAYGKTPATRPFYGSWPF 778
>SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 708 GGGXFGKXPXXGPFXGFGPF 649
GGG +GK P PF G PF
Sbjct: 1 GGGAYGKTPATRPFYGSWPF 20
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 834 GGGGXXXGPXGGFXGGKXRCFXXSRGG 754
GGGG G GG+ GG+ S+GG
Sbjct: 125 GGGGYGGGRGGGYGGGRRDYGGGSKGG 151
>SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 708 GGGXFGKXPXXGPFXGFGPF 649
GGG +GK P PF G PF
Sbjct: 24 GGGAYGKTPATRPFYGSWPF 43
>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 708 GGGXFGKXPXXGPFXGFGPF 649
GGG +GK P PF G PF
Sbjct: 555 GGGAYGKTPATRPFYGSWPF 574
>SB_8730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 708 GGGXFGKXPXXGPFXGFGPF 649
GGG +GK P PF G PF
Sbjct: 23 GGGAYGKTPATRPFYGSWPF 42
>SB_466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 708 GGGXFGKXPXXGPFXGFGPF 649
GGG +GK P PF G PF
Sbjct: 1 GGGAYGKTPATRPFYGSWPF 20
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,293,552
Number of Sequences: 59808
Number of extensions: 194434
Number of successful extensions: 665
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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