Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O14
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22740.2 68417.m03281 glycine-rich protein                          35   0.084
At4g22740.1 68417.m03280 glycine-rich protein                          35   0.084
At3g50580.1 68416.m05532 proline-rich family protein contains pr...    31   0.78 
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    29   3.1  
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi...    29   4.2  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    29   4.2  
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa...    29   5.5  
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa...    29   5.5  
At4g03120.1 68417.m00425 proline-rich family protein similar to ...    29   5.5  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    29   5.5  
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c...    28   7.3  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    28   7.3  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    28   7.3  
At1g04800.1 68414.m00476 glycine-rich protein                          28   7.3  
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP...    28   9.6  

>At4g22740.2 68417.m03281 glycine-rich protein
          Length = 356

 Score = 34.7 bits (76), Expect = 0.084
 Identities = 23/58 (39%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -3

Query: 828 GGXXXGPXGGFXGGKXRCF-XXSRGGF-PPXRXGXIFXNFFXGGGXFGKXPXXGPFXG 661
           GG   GP GGF GG    F   S GGF  P     +  NFF G   F       PF G
Sbjct: 11  GGGFGGPFGGFGGGSFGGFGRGSFGGFGGPNGPPSLMSNFFGGRDPFDDPFFTQPFGG 68


>At4g22740.1 68417.m03280 glycine-rich protein
          Length = 356

 Score = 34.7 bits (76), Expect = 0.084
 Identities = 23/58 (39%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -3

Query: 828 GGXXXGPXGGFXGGKXRCF-XXSRGGF-PPXRXGXIFXNFFXGGGXFGKXPXXGPFXG 661
           GG   GP GGF GG    F   S GGF  P     +  NFF G   F       PF G
Sbjct: 11  GGGFGGPFGGFGGGSFGGFGRGSFGGFGGPNGPPSLMSNFFGGRDPFDDPFFTQPFGG 68


>At3g50580.1 68416.m05532 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 265

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +1

Query: 691 PKXPPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPP 834
           P  PPP  K  K+ PP    ++P     TP F P  TP  +P  P  P
Sbjct: 88  PSPPPPAPK--KSPPPPTPKKSPSPPSLTP-FVPHPTPKKSPSPPPTP 132


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
            RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF00397:
            WW domain
          Length = 1088

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
 Frame = -3

Query: 879  PXXXQGEKGXXVFFXGGGGXXXGPXGGFXGGKXRCFXXSRGGFPPXR--XGXIFXNFFXG 706
            P   Q  +G    F  GGG      GG  GG+   F    GGF       G     F   
Sbjct: 822  PGYSQDRRGMVNRFDSGGGGTRWDSGGGFGGRGGGFSGREGGFGGREGGFGGREGGFGGR 881

Query: 705  GGXFG 691
            GG FG
Sbjct: 882  GGRFG 886


>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
           protein similar to Hsc70-interacting protein (Hip) from
           {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
           contains Pfam profile PF00515: tetratricopeptide repeat
           (TPR) domain
          Length = 441

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 831 GGGXXXGPXGGFXGGKXRCFXXSRGGFP 748
           GGG   G  GGF GG    F    GG P
Sbjct: 290 GGGFPGGMPGGFPGGMPGGFPGGMGGMP 317


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +1

Query: 691 PKXPPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPPXKENXXP 855
           P  PPP     +  PP  G + P     +P  S  K P   P  P+PP +    P
Sbjct: 217 PSPPPPGHPKRREQPPPPGSKRPTPSPPSP--SDSKRPV-HPSPPSPPEETLPPP 268


>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|Q05856 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/86 (26%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
 Frame = +2

Query: 506 PXPXPPXKXPXPXXWGGGXXXXXPXGGXXXXPXXXGXPXKKFFXKXX-QXGPKPXXGPXX 682
           P   PP +   P  +GG      P G     P     P ++F      Q G +P   P  
Sbjct: 157 PIIRPPGQMLPPPPFGG---QGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMI-PPP 212

Query: 683 GXFPXXPPPXKKXKKXXPXRXGGKPP 760
           G     PPP     +  P    G PP
Sbjct: 213 GGMMRGPPPPPHGMQGPPPPRPGMPP 238


>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|Q05856 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/86 (26%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
 Frame = +2

Query: 506 PXPXPPXKXPXPXXWGGGXXXXXPXGGXXXXPXXXGXPXKKFFXKXX-QXGPKPXXGPXX 682
           P   PP +   P  +GG      P G     P     P ++F      Q G +P   P  
Sbjct: 157 PIIRPPGQMLPPPPFGG---QGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMI-PPP 212

Query: 683 GXFPXXPPPXKKXKKXXPXRXGGKPP 760
           G     PPP     +  P    G PP
Sbjct: 213 GGMMRGPPPPPHGMQGPPPPRPGMPP 238


>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
           small nuclear ribonucleoprotein C; contains proline rich
           extensin domains, INTERPRO:IPR002965
          Length = 207

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/58 (32%), Positives = 20/58 (34%)
 Frame = +3

Query: 519 PPXXPXXPGFGGGXXXXXPPXGXXGFXXKXGXXPXKNFLXXGPKXXQNPKXXXXGGFS 692
           PP     PG GGG     P  G  G     G  P  N L   P    NP     G F+
Sbjct: 137 PPGMAPIPGQGGGPPGMAPIPGQGG-----GPPPNYNGLPPPPPYHTNPAAPPSGNFN 189


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 27/112 (24%), Positives = 28/112 (25%)
 Frame = +2

Query: 467 PPXPGXRGFXFXXPXPXPPXKXPXPXXWGGGXXXXXPXGGXXXXPXXXGXPXKKFFXKXX 646
           PP P         P P PP   P P           P       P     P K       
Sbjct: 25  PPGPSPCPSPPPKPQPKPP---PAPSPSPCPSPPPKPQPKPVPPPACPPTPPKPQPKPAP 81

Query: 647 QXGPKPXXGPXXGXFPXXPPPXKKXKKXXPXRXGGKPPREXXKHRXFPPXKP 802
              PKP   P     P   PP        P    G PP+        P  KP
Sbjct: 82  PPEPKPAPPPAPKPVPCPSPPKPPAPTPKPVPPHGPPPKPAPAPTPAPSPKP 133


>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
           contains Pfam domains PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 203

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = -3

Query: 864 GEKGXXVFFXGGGGXXXGPXGGFXGGKXRCFXXSRGGFPPXRXGXIFXNFFXGGGXFG 691
           G +G    + GGGG   G  GG  GG   C+     G            +  GGG +G
Sbjct: 103 GGRGSGGGYGGGGGGYGGRGGGGRGGSD-CYKCGEPGHMARDCSEGGGGYGGGGGGYG 159


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/57 (29%), Positives = 19/57 (33%)
 Frame = +1

Query: 691 PKXPPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPPXKENXXPFF 861
           P  PPP   +    PP      P      P  SP  TP +    P PP      P F
Sbjct: 500 PPPPPPPPPVYSPPPPPVYSSPP------PPPSPAPTPVYCTRPPPPPPHSPPPPQF 550



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/48 (29%), Positives = 16/48 (33%)
 Frame = +1

Query: 691 PKXPPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPP 834
           P  PPP        PP      P      P   P   P ++P  P PP
Sbjct: 456 PPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPP 503


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +1

Query: 700 PPPXKKIXKNXPPXXGGETPXGXXKTPGFSPXKTPXWAPXXPTPPXKENXXP 855
           PPP   +    PP      P      P +SP   P ++P  P PP K    P
Sbjct: 616 PPPPPPVHSPPPPVFSPPPPVHSPPPPVYSP-PPPVYSP--PPPPVKSPPPP 664


>At1g04800.1 68414.m00476 glycine-rich protein 
          Length = 200

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
 Frame = -3

Query: 840 FXGGGGXXXGPXGGFXGGKXRCFXXSRGGFPPXRXGXIFXNFFXG-GGXFGKXPXXGPFX 664
           F  GGG   G  GGF GG    F    GGF       +   F  G  G  GK    G   
Sbjct: 68  FGAGGGWIGGSVGGFGGGIGGGF--GGGGFGGGAGKGVDGGFGKGVDGGAGKGVDGGAGK 125

Query: 663 GF 658
           GF
Sbjct: 126 GF 127


>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 169

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = -3

Query: 867 QGEKGXXVFFXGGGGXXXGPXGGFXGGKXRCFXXSRGGFPPXRXGXIFXNFFXGGG 700
           +G  G      GGGG   G  GG+ GG    +    GG+     G      + GGG
Sbjct: 94  RGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGYERRSGGYGSGGGGG--GRGYGGGG 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,677,203
Number of Sequences: 28952
Number of extensions: 199209
Number of successful extensions: 674
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)