Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O12
(932 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 30 0.41
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 30 0.41
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 1.6
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 1.6
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 2.9
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 27 2.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 3.8
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 5.0
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 27 5.0
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 27 5.0
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 30.3 bits (65), Expect = 0.41
Identities = 40/209 (19%), Positives = 89/209 (42%), Gaps = 13/209 (6%)
Frame = +2
Query: 245 NENLNGMLSHGITTRSKQLASLKSHKDSLK--IPNKRKADSPLKDVTAKRAAFG-DITNA 415
NE + L I T LA+ + +K+ L+ + ++ A L++ + +I +
Sbjct: 1249 NEEVITELREKIETLKTDLANFRLNKEQLESQLQTEKAAVKKLENSNEEYKRHNQEILLS 1308
Query: 416 YNKSCAPQDKDKAMPVKKVTVET---KMLPAVKSIKSQTSTLNGKTSKTKQLQRVANNAI 586
N S + + + V+ E ++ + +KS+ T+ K+ + + + I
Sbjct: 1309 LNSSTSTSSDASRLKNELVSKENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQSKI 1368
Query: 587 DAVQKHFTKDPPKQVATRAQNGILKNFERKDKLKEQNLSNGSVKSAR-------SDVSGE 745
+ ++ TK T+ + + K+ E+ +++++Q S A+ ++ +
Sbjct: 1369 EQLELKNTKLAAAW-RTKYEQVVNKSLEKHNQIRQQLSQKTSELEAKVAECHQLNEQLNK 1427
Query: 746 PSLYMTALENISPSEVTKEEYKQISEKLN 832
PS TA PS V+ EE+ E+L+
Sbjct: 1428 PSATPTATTQSEPSTVSLEEFNSTKEELS 1456
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 30.3 bits (65), Expect = 0.41
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +2
Query: 596 QKHFTKDPPKQVATRAQNGILKNFERKDKLKEQN------LSNGSVKSARSDVSGEPSLY 757
+K+F P V + + I++NF+ LK Q+ +S GS K+ S V G P +
Sbjct: 562 KKNFVSAPEGSVFYKGKVQIIRNFQFSSALKRQSSVSNVRVSGGSFKTFVS-VKGAPEVI 620
Query: 758 MTALENISPSEVTKEEYKQISEKLNKV 838
T L + P + K YK K ++V
Sbjct: 621 ATMLREV-PKDYEK-IYKDYGRKGSRV 645
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 716 KSARSDVSGEPSLYMTALENISPSEVTKEEYKQISEKLNKVN 841
+S + D E + +E+ SP VTK + K+ +KLNK +
Sbjct: 6 RSTQRDADLELESLQSEIESESPQPVTKSKAKKNKKKLNKAS 47
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 28.3 bits (60), Expect = 1.6
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 2/166 (1%)
Frame = +2
Query: 284 TRSKQLASLKSHKDSLKIPNKRKAD--SPLKDVTAKRAAFGDITNAYNKSCAPQDKDKAM 457
+R K S+ S LK+PNK ++ SPL+ T+ F + ++ + + K +A
Sbjct: 209 SRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTSSSKTFVIVDHSTPSPPSIRTKLEAF 268
Query: 458 PVKKVTVETKMLPAVKSIKSQTSTLNGKTSKTKQLQRVANNAIDAVQKHFTKDPPKQVAT 637
K L + +++S + S K LQ ++ + ++ K+
Sbjct: 269 APNSTFATQKRLRRLATLESSPAL----RSTLKSLQS-KSSPVKLLKL-------KEEKA 316
Query: 638 RAQNGILKNFERKDKLKEQNLSNGSVKSARSDVSGEPSLYMTALEN 775
+ +N + K+ E KD + +Q L S S S E + +N
Sbjct: 317 KIKNQLFKSEEEKDPVGKQKLPLESSLSPLDHSSAEKEMQKAPAKN 362
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 28.3 bits (60), Expect = 1.6
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +2
Query: 500 VKSIKSQTSTLNGKTSKTKQLQRVANNAIDAVQKHFTKDPPKQVATRAQNGILKNFERKD 679
V+S S+TS L+ + + ++ ++ A++ + +PPK A + K + D
Sbjct: 363 VESDDSRTSALSNSQNPSDDVENQSDQALEVLS---LTNPPKIDNASADTTLHKETNKID 419
Query: 680 KL-KEQNLSNGSVKSARSDVSGEPSLYMTALEN 775
KL +N + +V S S G +L A EN
Sbjct: 420 KLYVSENKAESAVASESSLSEGTLALKAPAPEN 452
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 746 PSLYMTALENISPSEVTKEEYKQISEKLNKVNLDDTSRSWMXNRDPHKL 892
P L +L+++ S + E+++ + + KVN + S++ N D HKL
Sbjct: 1442 PLLISASLDDVERS-IESEDFQSVGDVNVKVNRNTREISFIYNVDEHKL 1489
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 27.5 bits (58), Expect = 2.9
Identities = 24/106 (22%), Positives = 46/106 (43%)
Frame = +2
Query: 272 HGITTRSKQLASLKSHKDSLKIPNKRKADSPLKDVTAKRAAFGDITNAYNKSCAPQDKDK 451
HGI + KQLA +K KD N+ S +++ + A + N+ +++ K
Sbjct: 380 HGIKGKLKQLAEIKLSKDGKPFENEFNIKSFNRNLVKRAAVMAKLQR--NQL---EEELK 434
Query: 452 AMPVKKVTVETKMLPAVKSIKSQTSTLNGKTSKTKQLQRVANNAID 589
A + K T++ + + + K +QL++ + NA D
Sbjct: 435 AKGIYKPTIQGEK----EEEEDPLERARNDAEKIRQLEKASGNASD 476
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 3.8
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 554 KQL-QRVANNAIDAVQKHFTKDPPKQVATRAQNGILKNFERKDKLKEQNLSNGSVKSARS 730
KQL Q+ NNA DA + +K+ ++ R NF + +N+SN K
Sbjct: 1046 KQLKQKKLNNAKDAHEMQESKN--EETFVRNDVAQEDNFIELSSNEVRNVSNDEHKHTL- 1102
Query: 731 DVSGEPSLYMTALENISPSEVTKEEYKQISEKLNKVNLDDT 853
G+ SL L ++P T E+K+ ++K + VN+ T
Sbjct: 1103 -FHGQ-SLTHNNLIAVTPPSRTGVEHKEENKKYDNVNIQKT 1141
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 5.0
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +2
Query: 539 KTSKTKQLQRVANNAIDAVQKHFTKDPPKQVATRAQNGILKNFERKDKL-KEQNLSNGSV 715
K+ + K L+ ++ ++ F K+P ++ ++ NG +N + D K +N S
Sbjct: 357 KSKRVKTLENLSIMDFVQPKQMFGKEPEGYLSNQSNNGSAQNKKSGDNSEKTKNSLKSSS 416
Query: 716 KSARSDVSGEPSLYMTALENISPSEVTK 799
K + + SG+ T +E +S + V K
Sbjct: 417 KKSANTGSGQGK---TKVEYVSYNSVDK 441
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 338 PNKRKADSPLKDVTAKRAAFGDITNAYNKSCAPQDKDKAMP 460
P+ +++ PL+D +R GDI +A N S +D K P
Sbjct: 515 PSNNQSNPPLRDQEPQRGDKGDIKSAINNS--TEDLSKKHP 553
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 26.6 bits (56), Expect = 5.0
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Frame = +2
Query: 170 NITARAVKSRSVMAPTRLATKPLGVN---ENLNGMLSHGITTRSKQLASLKSHKDSL-KI 337
+ITA+ + S + ++ +T L V + NG + H + L+S + + L
Sbjct: 30 SITAKQLYDASKITSSKRSTSDLHVQLLEKYRNGKVKHASQIKELGLSSKDTKRTLLGNS 89
Query: 338 PNKRKADSPLKDVTAKRAAFGDITNAYNKSCAPQDKDKAMPVKKVTVETKMLPAVKS 508
+ +K S +K + + + +I N ++ P KD+ P K +++ + KS
Sbjct: 90 LDVQKDASGVKHLQEQSSK--EIKNPISQPILPNKKDEISPAKPSAIDSSIKDVTKS 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,596,072
Number of Sequences: 5004
Number of extensions: 74341
Number of successful extensions: 252
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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