Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O11
(882 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 87 1e-17
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 87 1e-17
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 87 1e-17
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 49 5e-06
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 46 4e-05
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 44 1e-04
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 44 1e-04
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 43 2e-04
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 43 2e-04
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 42 5e-04
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 41 0.001
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 38 0.007
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 38 0.007
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 38 0.012
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 38 0.012
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 38 0.012
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 37 0.016
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 37 0.016
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 37 0.016
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 37 0.016
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 36 0.036
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 36 0.047
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 36 0.047
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 36 0.047
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 36 0.047
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 36 0.047
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 36 0.047
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 34 0.11
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 34 0.11
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 34 0.14
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 34 0.14
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 34 0.14
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 34 0.14
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 34 0.14
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 34 0.14
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 33 0.19
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 33 0.19
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 33 0.19
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 33 0.19
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 33 0.19
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 33 0.25
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 33 0.33
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.33
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 32 0.44
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 32 0.44
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 32 0.44
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 32 0.58
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 32 0.58
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 32 0.58
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 32 0.58
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 32 0.58
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 32 0.58
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 32 0.58
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 32 0.58
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 32 0.58
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 32 0.58
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 32 0.58
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 32 0.58
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 31 0.77
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 31 0.77
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 31 0.77
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 31 0.77
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 31 0.77
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 31 0.77
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 31 1.0
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 31 1.0
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 31 1.0
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 31 1.0
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 31 1.0
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 31 1.0
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 31 1.0
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 31 1.0
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 31 1.3
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 31 1.3
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 31 1.3
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 30 1.8
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 30 1.8
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 30 1.8
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 30 1.8
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 30 1.8
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 30 2.4
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 30 2.4
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 30 2.4
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 30 2.4
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 30 2.4
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 30 2.4
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 30 2.4
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 30 2.4
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 30 2.4
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 29 3.1
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 29 3.1
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 29 3.1
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 29 3.1
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 29 3.1
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 29 3.1
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 29 3.1
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 29 3.1
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 29 3.1
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 29 4.1
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 29 4.1
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 4.1
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 29 4.1
At2g25420.1 68415.m03045 transducin family protein / WD-40 repea... 29 4.1
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 29 4.1
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 29 5.4
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 29 5.4
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 29 5.4
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 29 5.4
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 29 5.4
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 29 5.4
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 29 5.4
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 28 7.2
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 28 7.2
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 28 7.2
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 28 7.2
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 28 7.2
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 28 7.2
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 28 7.2
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 28 7.2
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 28 7.2
At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibit... 28 9.5
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 28 9.5
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 28 9.5
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 87.4 bits (207), Expect = 1e-17
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKT---RXGXVRVSRELPGHSGYLSCCRFL--DDNXILTSSG 809
+G VACGGLD++CSI+SL + + G V VSR L GH GY+SCC+++ +D ++TSSG
Sbjct: 118 NGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSG 177
Query: 810 DMTCALWDXXTGHXCGXFXG 869
D TC LWD TG F G
Sbjct: 178 DQTCILWDVTTGLKTSVFGG 197
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Frame = +2
Query: 347 QEAETLKNAIRDARKAACDTSLAQATS----NLEPIGRIQMRTRRTLRGHLAKIYAMHWG 514
+ L++ +R R DT +A+ ++ G + RTL+GH K+Y++ W
Sbjct: 15 ETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQGHTGKVYSLDWT 74
Query: 515 SDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPXG 649
+ +VSASQDG+LIVW++ T+ K HAI L +WVMTCA++P G
Sbjct: 75 PERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNG 119
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 723 RVSRELPGHSGYLSCCRFLDDNXIL-TSSGDMTCALWDXXTGH 848
R R GH G ++ +F D T S D TC L+D TGH
Sbjct: 239 RAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGH 281
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 87.4 bits (207), Expect = 1e-17
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKT---RXGXVRVSRELPGHSGYLSCCRFL--DDNXILTSSG 809
+G VACGGLD++CSI+SL + + G V VSR L GH GY+SCC+++ +D ++TSSG
Sbjct: 56 NGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSG 115
Query: 810 DMTCALWDXXTGHXCGXFXG 869
D TC LWD TG F G
Sbjct: 116 DQTCILWDVTTGLKTSVFGG 135
Score = 69.7 bits (163), Expect = 2e-12
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = +2
Query: 491 KIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPXG 649
++Y++ W + +VSASQDG+LIVW++ T+ K HAI L +WVMTCA++P G
Sbjct: 5 QVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNG 57
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 723 RVSRELPGHSGYLSCCRFLDDNXIL-TSSGDMTCALWDXXTGH 848
R R GH G ++ +F D T S D TC L+D TGH
Sbjct: 177 RAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGH 219
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 87.4 bits (207), Expect = 1e-17
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKT---RXGXVRVSRELPGHSGYLSCCRFL--DDNXILTSSG 809
+G VACGGLD++CSI+SL + + G V VSR L GH GY+SCC+++ +D ++TSSG
Sbjct: 118 NGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSG 177
Query: 810 DMTCALWDXXTGHXCGXFXG 869
D TC LWD TG F G
Sbjct: 178 DQTCILWDVTTGLKTSVFGG 197
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Frame = +2
Query: 347 QEAETLKNAIRDARKAACDTSLAQATS----NLEPIGRIQMRTRRTLRGHLAKIYAMHWG 514
+ L++ +R R DT +A+ ++ G + RTL+GH K+Y++ W
Sbjct: 15 ETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQGHTGKVYSLDWT 74
Query: 515 SDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPXG 649
+ +VSASQDG+LIVW++ T+ K HAI L +WVMTCA++P G
Sbjct: 75 PERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNG 119
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 723 RVSRELPGHSGYLSCCRFLDDNXIL-TSSGDMTCALWDXXTGH 848
R R GH G ++ +F D T S D TC L+D TGH
Sbjct: 239 RAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGH 281
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 643
L+GH ++I + W SD+R L S D KL VW+ H+T V ++ V A++P
Sbjct: 288 LKGHKSEICGLKWSSDNRELASGGNDNKLFVWNQHSTQPVLRFCEHAAAVKAIAWSP 344
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 476 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPXG 649
RGH+ +Y + W +DSR L+S S+D L +W+ T +P + V ++P G
Sbjct: 399 RGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDG 456
Score = 44.8 bits (101), Expect = 8e-05
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +2
Query: 416 QATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH 595
QA + P+ R +T+ GH + + + D + L S S D + +WD +T +
Sbjct: 90 QAVFRIRPVNRCS----QTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLF 145
Query: 596 AIPLRSSWVMTCAYAPXG 649
+WV+T A++P G
Sbjct: 146 TCKGHKNWVLTVAWSPDG 163
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPL--RSSWVMTCAYAP 643
T +GH + + W D ++LVS S+ G++ W+ ++ PL W+ ++ P
Sbjct: 146 TCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNP-KKGELEGSPLTGHKKWITGISWEP 204
Query: 644 XGL 652
L
Sbjct: 205 VHL 207
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 723 RVSRELPGHSGYLSCCRFLDDNXILTS-SGDMTCALWDXXT 842
R S+ + GH+ + C F D L S SGD T LWD T
Sbjct: 100 RCSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYT 140
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 738 LPGHSGYLSCCRFLDDNXILTSSGDMTCALWDXXTG 845
L GH+ ++C ++ D I T S D T +W+ G
Sbjct: 237 LSGHTLAVTCVKWGGDGIIYTGSQDCTIKMWETTQG 272
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC 631
L+GH I +HW SD +VSAS D + WD T ++ + SS+V +C
Sbjct: 92 LKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHSSFVNSC 144
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/45 (22%), Positives = 21/45 (46%)
Frame = +2
Query: 509 WGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 643
W D + + S D + +WD+ + ++ +P + V C + P
Sbjct: 280 WSPDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVFHP 324
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
TL GH I M D L++ D KL VWD
Sbjct: 217 TLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWD 250
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 643
L GH +++ + W D+R L S D +L VW+ H+T V ++ V A++P
Sbjct: 331 LAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSP 387
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +2
Query: 320 IMNELDSLRQEAETLK---NAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLA 490
I+N DS+R+ L+ N A+ D S T L + I M R GH
Sbjct: 208 IINFADSVRRRCSVLQWNPNVTTQIMVASDDDS--SPTLKLWDMRNI-MSPVREFTGHQR 264
Query: 491 KIYAMHW-GSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSW 619
+ AM W SDS L++ ++D + I WD++T V +P ++W
Sbjct: 265 GVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELPAGNNW 308
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +2
Query: 320 IMNELDSLRQEAETLK---NAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLA 490
I+N DS+R+ L+ N A+ D S T L + I M R GH
Sbjct: 208 IINFADSVRRRCSVLQWNPNVTTQIMVASDDDS--SPTLKLWDMRNI-MSPVREFTGHQR 264
Query: 491 KIYAMHW-GSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSW 619
+ AM W SDS L++ ++D + I WD++T V +P ++W
Sbjct: 265 GVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELPAGNNW 308
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +2
Query: 446 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVM 625
R+Q L GH +++ + W D R L S D +L+VW++H+ + + ++ V
Sbjct: 285 RVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVK 344
Query: 626 TCAYAP 643
++P
Sbjct: 345 AITWSP 350
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Frame = +2
Query: 401 DTSLAQATSNLEPIGRI-QMRTRRTL---RGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 568
D +LA A+ L+ + R+ +RT R++ +GH+ ++++++ + +L S +D + +W
Sbjct: 392 DGALA-ASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIW 450
Query: 569 DSHTTNKVHAIPLRSSWVMTCAYAP 643
D ++ IP ++ V Y P
Sbjct: 451 DLRMRKSLYIIPAHANLVSQVKYEP 475
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +2
Query: 413 AQATSNLEPIGRIQM----RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 580
A +T N G + + R +TL GH A I + + +D L SAS D +I+W +
Sbjct: 15 ANSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATN 74
Query: 581 TNKVHAIPLRSSWVMTCAYA 640
+ +H SS + A++
Sbjct: 75 YSLIHRYEGHSSGISDLAWS 94
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 467 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 574
R ++ H I ++H+ D +VSAS DG +WD+
Sbjct: 164 RMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDA 199
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 479 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 580
GH + I + W SDS SAS D L +WD+ +
Sbjct: 83 GHSSGISDLAWSSDSHYTCSASDDCTLRIWDARS 116
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 732 RELPGHSGYLSCCRFLDDNXILTS-SGDMTCALW 830
+ L GH+ +SC +F +D +L S S D T LW
Sbjct: 37 KTLEGHTAAISCVKFSNDGNLLASASVDKTMILW 70
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +2
Query: 467 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN-----KVHAIPLRS 613
+ LRGH ++ +++ S +VS S D + +W+ T K H++P+ S
Sbjct: 122 KVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISS 175
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 479 GHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 643
GH + I + W + NL SA +DG+L++WD+ T H + + V ++ P
Sbjct: 215 GHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNP 270
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = +2
Query: 287 VPRELCVTRVLIMNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTR 466
+P+ R+ + E++ R + K + A+ + C+ L + +
Sbjct: 104 IPKVEIRQRIRVDGEVNRARCMPQ--KPTLVGAKTSGCEVFLFDYAKHAAKSQTSECDPD 161
Query: 467 RTLRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHTT 583
L GH + Y + W L+S SQD K+ +WD T
Sbjct: 162 LRLVGHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSAT 201
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDNXILTSSGDMTCA 824
S +Y+A G D+ Y L+ + V GH +S +FL +N + ++S D T
Sbjct: 517 SSNYIAVGSADHHIHYYDLRNISQPLHV---FSGHKKAVSYVKFLSNNELASASTDSTLR 573
Query: 825 LWD 833
LWD
Sbjct: 574 LWD 576
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 37.5 bits (83), Expect = 0.012
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 443 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH 595
GR+ ++ +L GH +++ M W L S DG + +W S+ + H
Sbjct: 266 GRLPVKKVSSLSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQSNLNGEWH 316
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 467 RTLRGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSW 619
RT GH + AM W SDS L++ +D + I W++ T V +P +W
Sbjct: 246 RTFVGHQRGVIAMEWCPSDSLYLLTCGKDNRTICWNTKTGKIVAELPTGQNW 297
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 657 VACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYL-SCCRFLDDNXILTSSGDMTCALWD 833
+ GG D + I+ +T ++ S E GH + S C+ DD+ LT S D T LWD
Sbjct: 163 IVSGGEDKVIRIWDAETGK-LLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWD 221
Query: 834 XXT 842
T
Sbjct: 222 MRT 224
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 657 VACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYL-SCCRFLDDNXILTSSGDMTCALWD 833
+ GG D + I+ +T ++ S E GH + S C+ DD+ LT S D T LWD
Sbjct: 163 IVSGGEDKVIRIWDAETGK-LLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWD 221
Query: 834 XXT 842
T
Sbjct: 222 MRT 224
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 657 VACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYL-SCCRFLDDNXILTSSGDMTCALWD 833
+ GG D + I+ +T ++ S E GH + S C+ DD+ LT S D T LWD
Sbjct: 163 IVSGGEDKVIRIWDAETGK-LLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWD 221
Query: 834 XXT 842
T
Sbjct: 222 MRT 224
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 37.1 bits (82), Expect = 0.016
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +2
Query: 416 QATSNLEPIGRI-QMRTRRTL---RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 583
+A+S + + R+ +RT R + +GH+ ++ ++ + + +L S +D + +WD
Sbjct: 145 KASSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDLRMR 204
Query: 584 NKVHAIPLRSSWVMTCAYAP 643
++ IP + V Y P
Sbjct: 205 KLLYIIPAHVNLVSQVKYEP 224
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 35.9 bits (79), Expect = 0.036
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 657 VACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYL-SCCRFLDDNXILTSSGDMTCALWD 833
+ GG D I+ +T ++ S E GH + S C+ DD+ LT S D T LWD
Sbjct: 190 IVSGGEDAAIRIWDAETGK-LLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAKLWD 248
Query: 834 XXT 842
T
Sbjct: 249 MRT 251
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 35.5 bits (78), Expect = 0.047
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 648 GSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDNXILTSSGDMTCAL 827
GS +A G D +Y ++ + V L GH+ ++ RF+D + I+T S D +
Sbjct: 225 GSSIAVGCADRNAYVYDIRRLVDPLIV---LDGHTKTVTYARFMDSHTIVTGSTDGSLKQ 281
Query: 828 WDXXTG 845
WD G
Sbjct: 282 WDIDNG 287
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 467 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPX 646
R GH + + ++ D R + S +DG +++WD T + + +S V + +Y+
Sbjct: 535 RIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGE 594
Query: 647 GLL 655
G L
Sbjct: 595 GSL 597
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +2
Query: 422 TSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 601
T+ + + RIQ R + GHL+ + W + + + S D + +WD T V
Sbjct: 483 TARIWSMDRIQ--PLRIMAGHLSDV---DWHPNCNYIATGSSDKTVRLWDVQTGECVRIF 537
Query: 602 PLRSSWVMTCAYAPXG 649
S V++ A +P G
Sbjct: 538 IGHRSMVLSLAMSPDG 553
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 35.5 bits (78), Expect = 0.047
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +2
Query: 446 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD------SHTTNKVHAIPL 607
RI+ T RGH ++ + W + L S D + +WD + TT +H +
Sbjct: 253 RIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEE 312
Query: 608 RSSWVMTCAYAP 643
+S V A+ P
Sbjct: 313 HTSAVKALAWCP 324
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 35.5 bits (78), Expect = 0.047
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +2
Query: 446 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD------SHTTNKVHAIPL 607
RI+ T RGH ++ + W + L S D + +WD + TT +H +
Sbjct: 243 RIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEE 302
Query: 608 RSSWVMTCAYAP 643
+S V A+ P
Sbjct: 303 HTSAVKALAWCP 314
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 35.5 bits (78), Expect = 0.047
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 580
TLRGH A + ++W D L S S D + +W+ T
Sbjct: 113 TLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRT 149
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD------SHTTNKVHAIPLRSSWVMTCA 634
LRGHL+ + + W + S S D +I+W +H T+ A L S++
Sbjct: 156 LRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAHRTDGHWAKSLGSTFFRRLG 215
Query: 635 YAPXG 649
++P G
Sbjct: 216 WSPCG 220
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 35.5 bits (78), Expect = 0.047
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 735 ELPGHSGYLSCCRFLDDNXILTSSGDMTCALWDXXT 842
EL GH +SC + L +LT++ D T +WD T
Sbjct: 934 ELKGHDSQVSCVKMLSGERVLTAAHDGTVKMWDVRT 969
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +2
Query: 452 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC 631
+ R +T GH ++ + W L S S D +W+ + VH + + + T
Sbjct: 437 ETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTI 496
Query: 632 AYAPXG 649
++P G
Sbjct: 497 RWSPTG 502
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
TL H I+++ W L++ S D +VWD
Sbjct: 360 TLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWD 393
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 657 VACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRF-LDDNXILTSSGDMTCALWD 833
+ G D I+ + T + + LP HS ++ F D + I++SS D C +WD
Sbjct: 128 IVSGSFDETVRIWDVTTG----KCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWD 183
Query: 834 XXTGH 848
TGH
Sbjct: 184 SGTGH 188
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 479 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 643
GH I + + SD+R +VSAS D L +WD T + + + +++ + P
Sbjct: 69 GHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNP 123
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 467 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPX 646
+TL GH + +++ S +VS S D + +WD T + +P S V +
Sbjct: 107 KTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRD 166
Query: 647 GLL 655
G L
Sbjct: 167 GSL 169
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSH 577
R R TL GH K+ A+ SR++VSA+ D + +WD H
Sbjct: 306 RVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLH 346
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +2
Query: 482 HLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSHT---TNKVHAIPL 607
H + I A W S +L+SAS DGK+++WD T T H+ PL
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAVMTKHTHSFPL 402
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 738 LPGHSGYLSCCRFLDDNXILTSSGDMTCALWD 833
L GH+ +S +FLD+ ++T+S D T LWD
Sbjct: 878 LSGHNKAVSYAKFLDNETLVTASTDNTLKLWD 909
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 449 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
+ ++ R RGH +I + + D + ++S+S DG L +WD
Sbjct: 545 VTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWD 585
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 479 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPXGLLR 658
GH IYA+ W DS+ +++ S D VW+ + ++ +++ M A L+
Sbjct: 94 GHKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAEDGTIGSV-IKTLSFMESGGAEDMLVG 152
Query: 659 RLRWTGQHLL 688
L W HL+
Sbjct: 153 CL-WQNDHLI 161
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/92 (25%), Positives = 43/92 (46%)
Frame = +2
Query: 326 NELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAM 505
+ELD L ++ E L + AACD + E R+ + G + ++
Sbjct: 152 SELDELDEKVEALDRHLA----AACDDGCVRIYYISESDKLTYYRSLPRVTG---RALSV 204
Query: 506 HWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 601
W +D++ + S S DG + WD++ ++V+ I
Sbjct: 205 TWSADAQRIFSGSSDGLIRCWDANLCHEVYRI 236
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLS--CCRFLDDNXILTSSGDMT 818
+G+ +A G +D I++++ EL GH+ + C + + T+SGD +
Sbjct: 31 NGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKHSDLVATASGDKS 90
Query: 819 CALWDXXTG 845
LWD +G
Sbjct: 91 VRLWDARSG 99
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 467 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW--DSHTTNKVHAIPLR 610
R +GH K++++ W S+ L S S D +W + H +K + L+
Sbjct: 14 REYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELK 63
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 452 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 601
++ + L GH + A+ W S+ L+S S D ++ +W+ + +H+I
Sbjct: 39 RLSQEQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLHSI 88
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 648 GSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSC-CRFLDDNXILTSSGDMTCA 824
G Y+A GG+D I+ ++TR + PGH +SC C + + + S D T
Sbjct: 234 GRYLATGGVDRHVHIWDVRTREHV----QAFPGHRNTVSCLCFRYGTSELYSGSFDRTVK 289
Query: 825 LWD 833
+W+
Sbjct: 290 VWN 292
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 437 PIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIP 604
P G ++R ++L H AK+ + + S+S D +I+WD + + V +P
Sbjct: 3308 PRGSRRLRLEKSLCAHTAKVICLRVSQPYMMIASSSDDCTVIIWDLSSLSFVRQLP 3363
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDNXILTSSGDMTCA 824
SG +A G D+ +Y R + + + GHS +S +F+D + +++SS D T
Sbjct: 672 SGRSLAFGSADH--KVYYYDLRNPKIPLCTMI-GHSKTVSYVKFVDSSTLVSSSTDNTLK 728
Query: 825 LWD 833
LWD
Sbjct: 729 LWD 731
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRF-LDDNXILTSSGDMTC 821
+ Y+A D I+++ ++ + L GH ++ C F +D ++T+S DMT
Sbjct: 222 ANKYLATASSDKTVKIWNVD----GFKLEKVLTGHQRWVWDCVFSVDGEFLVTASSDMTA 277
Query: 822 ALWDXXTGHXCGXFXG 869
LW G + G
Sbjct: 278 RLWSMPAGKEVKVYQG 293
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 32.7 bits (71), Expect = 0.33
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD--SHTTNKVHAIPLRSSWVMT 628
R R RGH ++ A+ + S +VSA D L VWD SH+ V I VM+
Sbjct: 93 RVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWDCRSHSVEPVQIIDTFLDTVMS 151
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 32.7 bits (71), Expect = 0.33
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 479 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
GH IYA+ W D + +++ S D +WD
Sbjct: 230 GHKGSIYAVSWSPDGKQVLTVSADKSAKIWD 260
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 32.3 bits (70), Expect = 0.44
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +2
Query: 464 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 643
+ TL GH + A+ W D R +++ + + WD + + VH ++C + P
Sbjct: 312 KHTLVGHHKPVIAILWSPDDRQVLTCGAEEVIRRWDVDSGDCVHMYEKGGISPISCGWYP 371
Query: 644 XG 649
G
Sbjct: 372 DG 373
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 651 SYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDN--XILTSSGDMTCA 824
+++A G D+ I+ T G + V ELPGH+G ++C + N + ++S D T
Sbjct: 502 AFIASGSEDSQVYIWHRST--GKLIV--ELPGHAGAVNCVSWSPTNLHMLASASDDGTIR 557
Query: 825 LW 830
+W
Sbjct: 558 IW 559
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 467 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 586
+ RGH + + + SD +++AS D + VWDS TT+
Sbjct: 341 KEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTD 380
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +2
Query: 449 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMT 628
+Q + + H + + + DS L S SQDGK+ +W T + S V +
Sbjct: 251 LQYQADESFMMHDDPVLCIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTS 310
Query: 629 CAYAPXG 649
+++ G
Sbjct: 311 LSFSRDG 317
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 32.3 bits (70), Expect = 0.44
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 437 PIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIP 604
P G ++R + L H AK+ + + S S D +I+WD + + V +P
Sbjct: 3364 PRGSRRLRLEKALCAHTAKVTCLRVSQPYMMIASGSDDCTVIIWDLSSLSFVRQLP 3419
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAY 637
+ ++L H + + W D L+S S D I+WD + + + +V A+
Sbjct: 44 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 103
Query: 638 AP 643
P
Sbjct: 104 DP 105
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAY 637
+ ++L H + + W D L+S S D I+WD + + + +V A+
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
Query: 638 AP 643
P
Sbjct: 163 DP 164
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAY 637
+ ++L H + + W D L+S S D I+WD + + + +V A+
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
Query: 638 AP 643
P
Sbjct: 163 DP 164
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = +3
Query: 648 GSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDNXILTSSGDMTCAL 827
G VA G D +Y ++ V + L GH+ +S RFLD ++T+ D L
Sbjct: 82 GPAVAVGCADRKGYVYDIRK---LVDPALTLQGHTKTVSYVRFLDGGTVVTAGTDGCLKL 138
Query: 828 WDXXTGHXCGXFXG 869
W G + G
Sbjct: 139 WSVEDGRVIRTYEG 152
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 31.9 bits (69), Expect = 0.58
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 392 AACDTSLAQA--TSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIV 565
AACD + SNLE ++ R+L + ++ W D++ + S S DG +
Sbjct: 170 AACDDGCVRLYRISNLE-----KLTYYRSLPRVSGRALSVTWSPDAKRIFSGSSDGLIRC 224
Query: 566 WDSHTTNKVHAI 601
WD+ + ++V+ I
Sbjct: 225 WDATSCHEVYRI 236
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDNXILTSSG-DMTC 821
SG+ + G DN+C ++ + G + + L GH ++ D S+G D T
Sbjct: 283 SGNLILSGSDDNLCKVWDRRCFIGRDKPAGVLVGHLEGVTFIDSRGDGRYFISNGKDQTI 342
Query: 822 ALWD 833
LWD
Sbjct: 343 KLWD 346
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 648 GSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDNXIL-TSSGDMTCA 824
G +V GGLDN+ ++ L ++ E H G + F +L T S D T
Sbjct: 154 GRWVVSGGLDNVVKVWDLTAG----KLLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVK 209
Query: 825 LWDXXTGHXCG 857
WD T G
Sbjct: 210 FWDLETFELIG 220
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +2
Query: 410 LAQATSNLEPIGRIQ-MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 586
LA A+S + + ++ + R GH + A+ + L S S D L +WD
Sbjct: 74 LAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIRKKG 133
Query: 587 KVHAIPLRSSWVMTCAYAPXG 649
+ S + T + P G
Sbjct: 134 CIQTYKGHSRGISTIRFTPDG 154
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 31.9 bits (69), Expect = 0.58
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
T H + A+H+ +D+ +L+SAS DG + WD
Sbjct: 386 TFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 419
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 31.9 bits (69), Expect = 0.58
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
T H + A+H+ +D+ +L+SAS DG + WD
Sbjct: 426 TFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 459
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 648 GSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDNXIL-TSSGDMTCA 824
G +V GGLDN+ ++ L ++ E H G + F +L T S D T
Sbjct: 103 GRWVVSGGLDNVVKVWDLTAG----KLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVK 158
Query: 825 LWDXXTGHXCG 857
WD T G
Sbjct: 159 FWDLETFELIG 169
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +2
Query: 467 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPX 646
R GH + A+ + L S S D L VWD+ + + + T ++P
Sbjct: 43 RAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPD 102
Query: 647 G 649
G
Sbjct: 103 G 103
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/63 (23%), Positives = 25/63 (39%)
Frame = +2
Query: 467 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPX 646
+T +GH I + + D R +VS D + VWD +H + + + P
Sbjct: 85 QTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPL 144
Query: 647 GLL 655
L
Sbjct: 145 EFL 147
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 31.9 bits (69), Expect = 0.58
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGH--SGYLSCCRFL-DDNXILTSSGDM 815
+G+++A LDN IYS + R + + GH +GY F D +++ G+
Sbjct: 466 NGNWLAAQSLDNQILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 524
Query: 816 TCALWD 833
C WD
Sbjct: 525 KCWFWD 530
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = +3
Query: 687 SIYSLKTRXGXVRVSRELPGHSGYLSCCRF-----LDDNXILTSSGDMTCALWDXXTG 845
+++ K G + GHS +++C F L +++ SGD T LWD +G
Sbjct: 182 TVFPKKPLEGAHEIQSFCLGHSEFITCTAFVSTPELTQGYLMSGSGDSTVRLWDITSG 239
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 675 DNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDNXILTSSGDMTCALWDXXTGHXC 854
D+ C ++ K + E GH+G + + DN +L++S D T LW +
Sbjct: 303 DSACVVFPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCL 362
Query: 855 GXF 863
G F
Sbjct: 363 GVF 365
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPL 607
+L GH ++ + S L S S DG L VWD ++ VH+I L
Sbjct: 126 SLEGHNKELKGIALPEGSDKLFSVSIDGTLRVWDCNSGQCVHSINL 171
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 31.5 bits (68), Expect = 0.77
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 675 DNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDNXILTSSGDMTCALWDXXTG 845
+N YSLK+ V+ E GH + +DN +L S+ +W+ TG
Sbjct: 381 NNSLEFYSLKSSENAKTVTIEHQGHRSDVRSVTLSEDNTLLMSTSHSEVKIWNPSTG 437
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 308 TRVLIMNELDSLRQEAETLKNAIR-DARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGH 484
T+ L ++ + S++ + L AI DA+ A +A S ++ ++ +L GH
Sbjct: 526 TKKLTVSNVKSMKMNDDVLAVAISPDAKHIA----VALLDSTVKVFYMDSLKFYLSLYGH 581
Query: 485 LAKIYAMHWGSDSRNLVSASQDGKLIVW 568
+ + SD +V+ SQD L +W
Sbjct: 582 KLPVMCIDISSDGELIVTGSQDKNLKIW 609
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 580
LRGH ++ + + + LVS+S+D L VWD T
Sbjct: 144 LRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLET 179
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 657 VACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDNXILTSSG-DMTCALWD 833
VA GG D+ ++ + G + ELPGH +SC F D +L S G D ++D
Sbjct: 86 VATGGGDDKAFLWKI----GNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDGVVQIFD 141
Query: 834 XXTG 845
+G
Sbjct: 142 ASSG 145
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 449 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH 595
+Q T R + H + ++ W S+ L + +G + +WDS N VH
Sbjct: 316 LQHSTPRFICEHEEGVTSLTWIGTSKYLATGCANGTVSIWDSLLGNCVH 364
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 479 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 601
GH + + D + + + S D LIVW+ T +H +
Sbjct: 195 GHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHIV 235
>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 310
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 296 ELCVTRVL-IMNELDSLRQEAETLKNAIRDARK-AACDTSLAQATSNLEPIGRIQMR 460
ELC+ R+ +M ELDSLR E ++L+ D K TS + + S PI Q R
Sbjct: 97 ELCLNRLQSLMTELDSLRHENDSLRFENSDLLKLIRISTSSSSSVSPPAPIHNRQFR 153
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 31.5 bits (68), Expect = 0.77
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 601
+T TL GHL +A W D + +QD VWD +K A+
Sbjct: 308 KTLATLSGHLDFSFASAWHPDGFTFSTGNQDKTCRVWDIRNLSKSVAV 355
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 568
++ H I AM + D R L SA +DG L VW
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVW 278
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 568
++ H I AM + D R L SA +DG L VW
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVW 278
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 482 HLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMT 628
H + I A W S +L+SAS DGK+++WD T + I + V++
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLS 406
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 428 NLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 583
NL IQ +L G + ++Y++ G+D L + +QDG ++VW ++T
Sbjct: 204 NLVKAWNIQNNADLSLNGPVGQVYSLVVGTDL--LFAGTQDGSILVWRYNST 253
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 461 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 574
T R GH + ++ + +D+R +VSAS+D + +W++
Sbjct: 97 TTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNT 134
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +3
Query: 723 RVSRELPGHSGYLSCCRFLDDNXILTSSG-DMTCALWDXXTG 845
++ L GHSGYL+ D + S G D LWD G
Sbjct: 184 KLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEG 225
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 744 GHSGYLSCCRFLDDNXILTSSGDMTCALWD 833
GH +S RF+D + +++SS D T LWD
Sbjct: 660 GHHKTVSYVRFVDSSTLVSSSTDNTLKLWD 689
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 744 GHSGYLSCCRFLDDNXILTSSGDMTCALWD 833
GH +S RF+D + +++SS D T LWD
Sbjct: 660 GHHKTVSYVRFVDSSTLVSSSTDNTLKLWD 689
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 461 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNK--VHAIPLRSSWVMTCA 634
TRR + GH + ++ + +D+R +VSAS+D + +W++ K + WV
Sbjct: 98 TRRFV-GHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEADGHKEWVSCVR 156
Query: 635 YAPXGLL 655
++P L+
Sbjct: 157 FSPNTLV 163
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +3
Query: 723 RVSRELPGHSGYLSCCRFLDDNXILTSSG-DMTCALWDXXTG 845
++ L GHSGYL+ D + S G D LWD G
Sbjct: 184 KLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEG 225
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 601
+ R TL GH + + D S +DG +++WD K++++
Sbjct: 184 KLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSL 231
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRS 613
L GH I + S L S S DG L++WD ++ V +I L++
Sbjct: 183 LEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQCVRSINLQA 229
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 643
TL GHL I + + ++ +VSAS D + +W+ + + + + +VM ++ P
Sbjct: 88 TLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP 145
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 574
TLRGH+ + ++ + + +VS S+D + VWD+
Sbjct: 243 TLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDA 277
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDD-NXILTSSGDMTC 821
S +A GG+D ++ + ++ L GHS ++ +F+ D + +LT+S D T
Sbjct: 233 SKDVIATGGIDTTAVLFDRPSG----QILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTV 288
Query: 822 ALW 830
+W
Sbjct: 289 RIW 291
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +2
Query: 410 LAQATSNLEPIGRIQMRT-RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 586
LA +++NL + ++ + R +L+GH I ++ W L S S+D + VW T +
Sbjct: 792 LAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSED-MVKVWTLGTGS 850
Query: 587 K---VHAIPLRSSWVMTCAYAP 643
+ VH + + +C + P
Sbjct: 851 EGECVHELSCNGNKFQSCVFHP 872
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH--AIPLRSSWVMTC 631
LRGH + + S R +S S D + +WD +H A+ S W + C
Sbjct: 251 LRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALAC 305
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 476 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNK 589
+GH +YA+ LVS + L VWD T +K
Sbjct: 210 KGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSK 247
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH--AIPLRSSWVMTC 631
LRGH + + S R +S S D + +WD +H A+ S W + C
Sbjct: 251 LRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALAC 305
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 476 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNK 589
+GH +YA+ LVS + L VWD T +K
Sbjct: 210 KGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSK 247
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDSHTTN---KVHAIPLRSSWVMTCA 634
TL GH ++ + W L S S DG++I+W N + H S V + A
Sbjct: 51 TLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVNSIA 110
Query: 635 YAP 643
+AP
Sbjct: 111 WAP 113
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 476 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
+ H I ++ + SD R L+S S DG L VWD
Sbjct: 370 KAHTDDITSVKFSSDGRILLSRSFDGSLKVWD 401
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 443 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWD 571
G + +R + +GH+ + W ++ V ++S+DG L +WD
Sbjct: 264 GDMYIRDLKNTKGHICGLTCGEWHPRTKETVLTSSEDGSLRIWD 307
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWD 571
+L GH A Y M + R +SA DGK IVWD
Sbjct: 581 SLTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWD 615
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 446 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
RI+ T GH ++ + W + L S D + +WD
Sbjct: 205 RIRSSIVETYLGHTEEVCGLKWSESGKKLASGGNDNVVHIWD 246
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/108 (21%), Positives = 40/108 (37%)
Frame = +2
Query: 326 NELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAM 505
N + SL + + + DA + A T L + + + RTL GH + ++
Sbjct: 143 NAILSLYGHSSGIDSVTFDASEGLVAAGAASGTIKLWDLE--EAKVVRTLTGHRSNCVSV 200
Query: 506 HWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPXG 649
++ S S D L +WD +H + V + P G
Sbjct: 201 NFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG 248
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/62 (22%), Positives = 25/62 (40%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPXG 649
T +GH + + + D R +VS +D + VWD +H + + + P
Sbjct: 231 TYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHE 290
Query: 650 LL 655
L
Sbjct: 291 FL 292
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 479 GHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSHTTNK 589
GH A + + W D ++ S+++DG L +WD K
Sbjct: 373 GHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGK 410
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
+T TL GHL +A W D + +QD VWD
Sbjct: 310 KTLETLSGHLDFSFASAWHPDGVTFSTGNQDKTCRVWD 347
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFL-DDNXILTSSGDMTC 821
S +A GG+D ++ + ++ L GHS ++ +F+ D + +LT+S D T
Sbjct: 233 SKDVIATGGVDATAVLFDRPSG----QILSTLTGHSKKVTSVKFVGDSDLVLTASADKTV 288
Query: 822 ALW 830
+W
Sbjct: 289 RIW 291
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFL-DDNXILTSSGDMTC 821
S +A GG+D ++ + ++ L GHS ++ +F+ D + +LT+S D T
Sbjct: 233 SKDVIATGGVDATAVLFDRPSG----QILSTLTGHSKKVTSVKFVGDSDLVLTASADKTV 288
Query: 822 ALW 830
+W
Sbjct: 289 RIW 291
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 479 GHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSHTTNK 589
GH A + + W D ++ S+++DG L +WD +K
Sbjct: 384 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSK 421
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 663 CGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFL--DDNXILTSSGDMTCALWD 833
C D+ C I R G V++ H L C + DDN ILT S D T L+D
Sbjct: 309 CSVGDDSCLIL-WDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFD 366
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 643
TL GHL I + + + +VSAS D + +W+ + V + + +VM ++ P
Sbjct: 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHP 145
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 574
TLRGH+ + ++ + + +VS S+D + VWD+
Sbjct: 243 TLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDA 277
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 601
+T TL+GHL +A W + + +QD +WD+ ++ A+
Sbjct: 310 QTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWDTRKLSESVAV 357
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 601
+T TL+GHL +A W + + +QD +WD+ ++ A+
Sbjct: 304 QTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWDTRKLSESVAV 351
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHTT 583
L GH + Y + W S L+S SQD ++ +WD T
Sbjct: 165 LMGHEQEGYGLAWSSFKEGYLLSGSQDQRICLWDVSAT 202
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 482 HLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHT 580
H + + W + RN L SAS D K+ VWD T
Sbjct: 264 HTESVLGLAWNKEFRNILASASADKKVKVWDVAT 297
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 482 HLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHT 580
H + + W + RN L SAS D K+ VWD T
Sbjct: 232 HTRSVLGLAWNKEFRNILASASADKKVKVWDVAT 265
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 783 DNXILTSSGDMTCALWDXXTGHXCGXFXGXPG 878
D+ +LT+SGD T +WD G G G
Sbjct: 140 DSCLLTASGDQTIKVWDVEENKCTGVLIGHTG 171
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDSHTTN---KVHAIPLRSSWVMTCA 634
TL GH ++ + W L S S DG++I+W N + H V + A
Sbjct: 51 TLTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIA 110
Query: 635 YAPXGL 652
+AP L
Sbjct: 111 WAPHEL 116
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 419 ATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 577
A ++++ + +T T GH A + + D+ LV+ S+D +++W H
Sbjct: 2646 ADNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIH 2698
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRS 613
+ R TL GH + + D S +DG +++WD K++++ S
Sbjct: 185 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 236
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 461 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 574
TRR + GH + ++ + D+R +VSAS+D + +W++
Sbjct: 98 TRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 134
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 738 LPGHSGYLSCCRFLDDNXILTSSG-DMTCALWDXXTG 845
L GH+GY+S D + S G D LWD G
Sbjct: 190 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 226
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
L GH I+ + W D +VS S D +W+
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWE 263
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
L GH I+ + W D +VS S D +W+
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWE 263
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
L+GH + + + + +S +++AS+DG + VW+
Sbjct: 285 LKGHKSAVTWLCFSPNSEQIITASKDGSIRVWN 317
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 479 GHLAKIYAMHWGSDSRNLVSASQDGKLIVW 568
GH + + + D LVS SQDG + VW
Sbjct: 118 GHYRSVTCLVFSGDDSLLVSGSQDGSIRVW 147
>At2g25420.1 68415.m03045 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (3 repeats)
Length = 717
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKV 592
+ + L GH KI + + LVS+ DGKL +W + + K+
Sbjct: 502 KVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTKSWVKL 546
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 732 RELPGHSGYLSCCRFLDDNXILTSSGDMTCALW 830
+EL GH+G + + D N +L++S D T LW
Sbjct: 266 QELYGHTGDVLDLAWSDSNLLLSASKDKTVRLW 298
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 473 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 568
+ GH KI+ + + D + L + +DG + +W
Sbjct: 194 INGHKGKIWTLKFSPDGKYLATGGEDGVVKIW 225
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 446 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 571
RI+ T GH ++ + W + L S D + +WD
Sbjct: 223 RIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWD 264
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/108 (21%), Positives = 39/108 (36%)
Frame = +2
Query: 326 NELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAM 505
N + SL + + + DA + A T L + + + RTL GH + ++
Sbjct: 50 NAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLE--EAKIVRTLTGHRSNCISV 107
Query: 506 HWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPXG 649
+ S S D L +WD +H + V + P G
Sbjct: 108 DFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG 155
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/108 (21%), Positives = 39/108 (36%)
Frame = +2
Query: 326 NELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAM 505
N + SL + + + DA + A T L + + + RTL GH + ++
Sbjct: 50 NAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLE--EAKIVRTLTGHRSNCISV 107
Query: 506 HWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPXG 649
+ S S D L +WD +H + V + P G
Sbjct: 108 DFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG 155
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Frame = +3
Query: 651 SYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLD-DNXILTSSGDMTCAL 827
S V G D SI+ L V L GH + F D ++T+SGD T +
Sbjct: 512 SLVCTGSEDRTASIWRLPDLVHVVT----LKGHKRRIFSVEFSTVDQCVMTASGDKTVKI 567
Query: 828 WDXXTGHXCGXFXG 869
W G F G
Sbjct: 568 WAISDGSCLKTFEG 581
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 467 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 583
+T GH + + + +D VS DG L +W+ +T+
Sbjct: 577 KTFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTS 615
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 586
TL GH + + + DS +VSAS D L +W+ + TN
Sbjct: 889 TLAGHEKAVSYVKF-MDSETIVSASTDNSLKLWNLNKTN 926
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 738 LPGHSGYLSCCRFLDDNXILTSSGDMTCALWDXXTGHXCGXFXG 869
L GH +S +F+D I+++S D + LW+ + G G
Sbjct: 890 LAGHEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSPG 933
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYL-SCCRFLDDNXILTSSGDMTC 821
SGS G + C+ Y G ++++ GHS YL + + ILT S D T
Sbjct: 171 SGSVFTAAG--DSCA-YCWDVESGKIKMT--FKGHSDYLHTVVSRSSASQILTGSEDGTA 225
Query: 822 ALWDXXTG 845
+WD TG
Sbjct: 226 RIWDCKTG 233
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 601
+ + T +GH ++ + S + +++ S+DG +WD T V I
Sbjct: 192 KIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVI 239
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 568
RT LRGH + + S+ + L ++ D ++IVW
Sbjct: 390 RTTLMLRGHYESVNTCCFNSNDQELYTSGADRQIIVW 426
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/87 (25%), Positives = 34/87 (39%)
Frame = +3
Query: 573 ATRPTRCTRSRCARXXXXXXXXXXSGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHS 752
A++P CT A G LD + +++ L T + L GH
Sbjct: 199 ASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGLRNLFDL-TGFQKEKTEFRLWGHE 257
Query: 753 GYLSCCRFLDDNXILTSSGDMTCALWD 833
G ++ LD I + S DM+ +WD
Sbjct: 258 GPITSLA-LDMTSIFSGSWDMSVRIWD 283
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 645 SGSYVACGGLDNICSIYSLKTRXGXVRVSRELPGHSGYLSCCRFLDDNXILTSSGDMTCA 824
S S++A G C ++ L+ G + R H GY++ + + +++SS D T
Sbjct: 423 SPSWIAAGFSSGQCRLFDLREN-GFISSWR---AHDGYVTKLVAPESHLLVSSSLDKTLR 478
Query: 825 LWD 833
+WD
Sbjct: 479 IWD 481
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 410 LAQATSNLEPIGRIQMRTRRT--LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 583
LA A+ N I I+ +R +GH + ++++ W + + S S+D + +W +
Sbjct: 648 LAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSG 706
Query: 584 NKVHAI 601
+ +H +
Sbjct: 707 DCIHEL 712
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 410 LAQATSNLEPIGRIQMRTRRT--LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 583
LA A+ N I I+ +R +GH + ++++ W + + S S+D + +W +
Sbjct: 650 LAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSG 708
Query: 584 NKVHAI 601
+ +H +
Sbjct: 709 DCIHEL 714
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 410 LAQATSNLEPIGRIQMRTRRT--LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 583
LA A+ N I I+ +R +GH + ++++ W + + S S+D + +W +
Sbjct: 650 LAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSG 708
Query: 584 NKVHAI 601
+ +H +
Sbjct: 709 DCIHEL 714
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 410 LAQATSNLEPIGRIQMRTRRT--LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 583
LA A+ N I I+ +R +GH + ++++ W + + S S+D + +W +
Sbjct: 650 LAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSG 708
Query: 584 NKVHAI 601
+ +H +
Sbjct: 709 DCIHEL 714
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 410 LAQATSNLEPIGRIQMRTRRT--LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 583
LA A+ N I I+ +R +GH + ++++ W + + S S+D + +W +
Sbjct: 650 LAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSG 708
Query: 584 NKVHAI 601
+ +H +
Sbjct: 709 DCIHEL 714
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 467 RTLRGHLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC 631
RT + H +Y W ++ SAS D L +WD IP +++C
Sbjct: 143 RTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVREPGSTMIIPAHDFEILSC 198
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 458 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 568
RT LRGH + + S+ + L ++ D +++VW
Sbjct: 390 RTTLMLRGHYESVNTCCFNSNDQELYTSGSDRQILVW 426
>At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibitor
family protein similar to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 199
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 483 ISRRSTPCTGAAIPGTWCRPVRMVS*SCGTATRPTRC 593
I+ + P T A PGT+ V +C + T PT C
Sbjct: 15 INSSNFPKTAATPPGTYQNHTTYVKTACNSTTYPTMC 51
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 449 IQMRTRRTLRGHLAKIYAM-HWGSDSRNLVSASQDGKLIVW 568
I R RGH ++ M + D L S S DGK+ VW
Sbjct: 209 INTALRSLFRGHSQRVTDMAFFAEDVHLLASVSLDGKVFVW 249
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 470 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH 595
T+ H I AM W L + S D L WD+ N VH
Sbjct: 109 TVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTRQQNPVH 150
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,259,676
Number of Sequences: 28952
Number of extensions: 344772
Number of successful extensions: 1405
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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