Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O10
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    33   0.054
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    31   0.17 
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     30   0.38 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   1.5  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    28   2.0  
SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   2.7  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   4.7  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   6.2  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   8.2  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   8.2  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 34/133 (25%), Positives = 50/133 (37%), Gaps = 4/133 (3%)
 Frame = +1

Query: 487 TQGVPYPATQGAPYPTTQGCSIPDNSGVRHTRQLRGLPYPVAQSVPYPXCSECAISGCSE 666
           T+G P  A      P T   S+P ++ +  T  L G  YPV Q+   P   E  I+  S 
Sbjct: 321 TEGAPSNAQFRPSLPATPNGSVPQSNPLYDTTGLNGGQYPVVQNSAQPLLHE--INFASN 378

Query: 667 CAIPNNAGCTIPDNARCALPSPSWCRRILDGSPPADLNVANQHXGTEPR----SRAPXXX 834
                  G  +P +    LP     ++ LD   PA      Q  G +      S +P   
Sbjct: 379 RNPHLKQGGAVPSS---TLPQQ---QKSLDKPKPAQQPSTGQFSGNQMNQYGFSNSPYSQ 432

Query: 835 QAVHNXAAGVNPN 873
             ++N     NP+
Sbjct: 433 NMLYNFNGNANPS 445


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
 Frame = +2

Query: 623 HTRXAQSAPYPVAQN----APY----PTTQGAPYPTTHGAPYPVHHGVGGYSMAPPLQT* 778
           HTR     P+P   N     PY    P + GA  P  H +PYP  +G  G+         
Sbjct: 172 HTRPPHHPPHPHFHNNNYPPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRRQTHFAPY 231

Query: 779 MWRTSTXAPNLAAXP 823
            +     +P+L   P
Sbjct: 232 YYPQRATSPSLKQVP 246


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +2

Query: 524 HTRQLRGAPYPTTQGCAIPDNSGVYHTQLLRVCHTRXAQSAPYP-VAQNAPYPTTQGAPY 700
           H   +      TTQ   +P  S V H +      T  A  AP   VA+N PYP  Q  P 
Sbjct: 177 HANPVAAPSTATTQHTQLPKTSAVSHQKPHEAPST--AVKAPTATVAENEPYPKPQSVPT 234

Query: 701 PTT 709
            T+
Sbjct: 235 TTS 237


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
 Frame = +2

Query: 635 AQSAPYPVAQNAPYPTT----QGAPYPTTHGAPYPVHHGVGGYSMAPP---LQT*MWRTS 793
           +Q+AP+    +AP P T     G P P   GAP   +  +    M PP   L   M    
Sbjct: 480 SQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPF 539

Query: 794 TXAPNLAAXPPXXSRRYTTXQPGSTPTTDS 883
              P + A P           PGS  T++S
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSYNTSES 569


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 454 PTNVVVNAPYPTQGVPYPATQGAPYPTTQGCSIP 555
           PT +++ +P+      Y +  G P+ TTQ  + P
Sbjct: 46  PTGLLMGSPFVQSPTSYTSMHGLPFSTTQMAAAP 79


>SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 97

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
 Frame = -2

Query: 836 CXXXGARLRGSVPX---CWFATFRSAGG----EPSSILLHHDGLGKAHRALSGMVHP 687
           C    + L G  P    C FA  RS GG    +P S  LH+D + K H     +++P
Sbjct: 30  CAPLFSHLDGMTPCPIDCGFAVGRSRGGGFGGKPESNSLHYDTMHKQHAMPFFIINP 86


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 581 DNSGVYHTQLLRVCHTRXAQSAPYPVAQNAPYPTTQGAPYPTTHGAPYPV 730
           +N+G   + + R  + +   + P      + +  TQGAP   T+G P PV
Sbjct: 382 NNNGNTSSPVSRFSYGQHTSNVPSTQKLPSNFRVTQGAPPSHTYGPPPPV 431


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 489 SRVRRIDDDVCGR--YQHACLSPAPSTAAEYYTKDYD 385
           +R  R DDD   R  Y+ + LS APS A+ Y   D D
Sbjct: 159 TRSSRFDDDDDDRAPYEESRLSRAPSRASRYDDDDRD 195


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -2

Query: 323 ISSLINHCPSKILILQVFLSFSQNHFSVMMKLMRPVR 213
           +  L+ HC + +    V L +++N F + +  +RP++
Sbjct: 1   MGKLVKHCHTSLHSELVILFYAKNRFCISIDHLRPLK 37


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 565 GVRHTRQLRGLPYPVAQSVPYPXCSEC 645
           G++H + L  +  P   S+P P C+EC
Sbjct: 144 GIQHLKHLEYIILPYL-SIPAPMCTEC 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,763
Number of Sequences: 5004
Number of extensions: 70174
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)