Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O10
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.5  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 818 RLRGSVPXCWFATFRSAGGEPSSILLH 738
           R +GS+  CW     +A  E  S+  H
Sbjct: 207 RRKGSIARCWSLDSTAASDEDISLTTH 233


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 612 SNWVW*TPELSGMAHP 565
           ++W+W  P +SG A P
Sbjct: 385 ADWLWIVPPISGSATP 400


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 314 LINHCPSKILILQVFLSFSQNHFSVMMKLMRP 219
           +++ CPS ++ LQV ++ SQ   ++  K   P
Sbjct: 853 VLSGCPSNMMELQVDIADSQQPLNLSKKSPSP 884


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 485 RLRVCH--TRQLRVRHTRQLRGAPYPTTQGCAIPDNSGVYH 601
           R R  H  TRQ+ V     +R A +       I +NSGV H
Sbjct: 208 RCRTMHRLTRQVVVSSVANVRIADHRGVMPPVILENSGVVH 248


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 485 RLRVCH--TRQLRVRHTRQLRGAPYPTTQGCAIPDNSGVYH 601
           R R  H  TRQ+ V     +R A +       I +NSGV H
Sbjct: 208 RCRTMHRLTRQVVVSSVANVRIADHRGVMPPVILENSGVVH 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,102
Number of Sequences: 438
Number of extensions: 5431
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)