Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O08
         (876 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;...    36   1.4  
UniRef50_Q89UH4 Cluster: Blr1443 protein; n=3; Bradyrhizobium|Re...    36   1.8  

>UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 133

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = +1

Query: 346 MAFMMPVVKNDWDIYNS 396
           MAFMMPV+KN+WDIY +
Sbjct: 1   MAFMMPVMKNEWDIYKT 17


>UniRef50_Q89UH4 Cluster: Blr1443 protein; n=3; Bradyrhizobium|Rep:
           Blr1443 protein - Bradyrhizobium japonicum
          Length = 275

 Score = 35.5 bits (78), Expect = 1.8
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -1

Query: 405 GPLRVVYVPIVLHYWHHERHLGEGGGDSFVGTF 307
           GP + V    V H WHH   L EGG  +F GTF
Sbjct: 202 GPFKYVLATPVFHRWHH-TSLEEGGDTNFAGTF 233


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,882,169
Number of Sequences: 1657284
Number of extensions: 11821330
Number of successful extensions: 24787
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24775
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78292544701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)