Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O08
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    26   6.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   6.1  

>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 300 KLPPLRRNKICSRKLTLRSIMILI---FFFTECLYFRKIS 190
           +L P  +N + +     +S+ +L+   F F  CL+FRK S
Sbjct: 104 RLRPFAKNGVTNGVKLAQSLFLLLPFNFIFFACLFFRKAS 143


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 231 IFFFTECLYFRKISGFCRNL*VKLEFSWIKQSITV*AAAFTSMSHSLNRL 82
           ++FFT CL F K+ G   NL + ++ S +     + +AA   +S  L +L
Sbjct: 55  VYFFTPCLVFEKV-GNGLNLKMLIDLSLLPVFYVIISAASILISFLLAKL 103


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 128  TVILCLIQENSSLTYKFLQKPEIFLK 205
            ++I CL  EN  + Y  LQK E+F +
Sbjct: 1030 SIIKCLTNENEPVCYLGLQKLELFFQ 1055


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,957
Number of Sequences: 5004
Number of extensions: 46405
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)