Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O08
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345     30   2.8  
04_01_0079 + 886004-886531                                             29   6.5  
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508...    28   8.5  

>02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345
          Length = 654

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +3

Query: 492 RALSPRSAGLSPH---RSAPAMRSLSYCXAPHSXXLAACGARQPQQGFXXXRPEXXPXEK 662
           R   P SA  +PH    SAP  R  +Y    HS  L ACGA    Q          P E 
Sbjct: 291 RLAMPFSALAAPHVAAASAPPPRREAYATILHSEELYACGALVAAQSIRMASASGAPSEP 350

Query: 663 XXNKV 677
             + V
Sbjct: 351 ERDMV 355


>04_01_0079 + 886004-886531
          Length = 175

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = -1

Query: 675 PCXXIFXXGXLPGGXXXTLAGAVWRRTQRXSXSEARDSTTTSASPERCGED*ALP 511
           PC      G + GG      G VWR  +R   + A +     + P+  G   A+P
Sbjct: 87  PCRPAGPGGAVAGGGVLRSGGDVWRGWRRSLEALAAEDEAARSVPDLAGRHPAVP 141


>03_05_0176 +
           21546952-21547887,21548856-21548921,21549959-21550877,
           21551277-21551449,21551927-21552475
          Length = 880

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 324 SFVGTFLEKLPPLRRNKICSRKLTLRSIMILIFFFTECLY-FRKIS 190
           S  GTF    P +  +K C+RK+ + S  ++++  T CL  F+ +S
Sbjct: 204 SKAGTFRWMAPEMIHDKRCNRKVDVYSFGLVLWELTTCLVPFQNLS 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,842,890
Number of Sequences: 37544
Number of extensions: 335172
Number of successful extensions: 797
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)