Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O07
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.51 

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 23/76 (30%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
 Frame = -3

Query: 512 FXXXGGGGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXGXGGPPPXXXKXXXFXGX 333
           F   GGG   PP     F   G F   G    G         G  G P          G 
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249

Query: 332 KXGAXXGXPGG-GGXP 288
             G   G PGG GG P
Sbjct: 250 GLGGFGGGPGGFGGGP 265



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 23/77 (29%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
 Frame = -3

Query: 500 GGGGXXPPGXXXF-----FXXPGXFKXX-GXPPPGKKXXXXXKXGXGGPPPXXXKXXXFX 339
           GG G  PPG   F     F   G      G    G         G GG P          
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254

Query: 338 GXKXGAXXGXPGGGGXP 288
           G   G   G PGG G P
Sbjct: 255 GGGPGGFGGGPGGHGGP 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,495,341
Number of Sequences: 5004
Number of extensions: 16867
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)