Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O07
(892 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 30 2.2
SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 5.1
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44) 29 6.7
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 28 8.8
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53) 28 8.8
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28) 28 8.8
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 38.7 bits (86), Expect = 0.006
Identities = 32/92 (34%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Frame = -3
Query: 497 GGGXXPPGXXXFFXXP--GXFKXXGXPPPGKKXXXXXKXGXGGPPPXXXKXXXFXGXKXG 324
GGG PPG + P G + G PPPG G GGPPP G +
Sbjct: 544 GGGPPPPGAGQGWGQPPPGAGQGGGPPPPG--------AGQGGPPPPG------AGQEGP 589
Query: 323 AXXGXPGGGGXPPPXFXXGXXKXFFFLGXPPP 228
G GGG PPP G G PPP
Sbjct: 590 PPPGAGQGGGPPPPGAGQGW-------GLPPP 614
Score = 36.3 bits (80), Expect = 0.033
Identities = 27/78 (34%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Frame = -3
Query: 497 GGGXXPPGXXXFF--XXPGXFKXXGXPPPGKKXXXXXKXGXGGPPPXXXKXXXFXGXKXG 324
GGG PPG + PG + G PPPG G G PPP + G
Sbjct: 511 GGGPPPPGAGQGWGQPPPGAGQGGGPPPPG------AGQGGGPPPPGAGQGWGQPPPGAG 564
Query: 323 AXXGXP----GGGGXPPP 282
G P G GG PPP
Sbjct: 565 QGGGPPPPGAGQGGPPPP 582
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 33.5 bits (73), Expect = 0.23
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +1
Query: 367 GGGPPFPXFXXXKXFXPGGGXPXLLKXPGXXKKXXXPGGXXPPPP 501
G PP P PGGG P L PG P PPPP
Sbjct: 950 GNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPPP 994
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/53 (37%), Positives = 20/53 (37%)
Frame = +2
Query: 191 PPPXXXXXXXXXXGGGXPKKKXXFXXPXKKXGGGXPPPXXPPKXPPXXPPXXK 349
PPP GGG P P GG PPP PP PP PP K
Sbjct: 954 PPPPPPGGSAPPPGGGAPP----LPPPP---GGSAPPPPPPP--PPPPPPMRK 997
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +2
Query: 191 PPPXXXXXXXXXXGGGXPKKKXXFXXPXKKXGGGXPPPXXPPKXPPXXPP 340
PPP G P P G PPP PP P PP
Sbjct: 329 PPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPP 378
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/73 (28%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Frame = -3
Query: 425 PPPGKKXXXXXKXGXGGPPP--XXXKXXXFXGXKXGAXXGXPGGGGXPPPXFXXGXXKXF 252
PPP + G PPP G P GG PPP G
Sbjct: 329 PPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRPPS- 387
Query: 251 FFLGXPPPXXXXG 213
LG PPP G
Sbjct: 388 -SLGNPPPPPPPG 399
>SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/79 (30%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Frame = -3
Query: 515 FFXXXGGGGXXPPGXXXFFXXPGXFKXXGXP-PPGKKXXXXXKXGXGGP-PPXXXKXXXF 342
FF G PPG PG G P PPG G P PP
Sbjct: 75 FFLKGLNGPPGPPGAPGPPGEPGQVGMAGPPGPPGHVGEDGAPGAPGAPGPPGSPGAPGL 134
Query: 341 XGXKXG-AXXGXPGGGGXP 288
G K G PG G P
Sbjct: 135 PGEKGDPGLQGAPGAAGLP 153
>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = -2
Query: 429 GPPPGXKXFXXXKXXKXGXPPXXXKKXFXXGGKXG-GXXGGXXGGGXPPPXFFXGXXKXX 253
GPPPG + + + PP + G+ G G G G G PP G
Sbjct: 251 GPPPGQQGYGAPPGQQGYGPPLGQQGYGPPPGQQGYGPPPGQQGYGPPPGQQGYGSPPGQ 310
Query: 252 FFFGXPP 232
+G PP
Sbjct: 311 QGYGPPP 317
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 290 GXPPPXXPPKXPPXXPP 340
G PPP PP PP PP
Sbjct: 193 GGPPPPPPPPPPPPPPP 209
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 287 GGXPPPXXPPKXPPXXP 337
GG PPP PP PP P
Sbjct: 193 GGPPPPPPPPPPPPPPP 209
>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2214
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = -2
Query: 426 PPPGXKXFXXXKXXKXGXPPXXXKKXFXXGGKXGGXXGGXXGGGXP 289
PPPG K + F GG+ GG GG GG P
Sbjct: 69 PPPGEKDESGDGGDADEGGETEAGEEFDEGGEEGGEEGGEEAGGPP 114
>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
Length = 667
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 278 KXGGGXPPPXXPPKXPPXXPP 340
+ G PPP PP PP PP
Sbjct: 424 RCGTATPPPTPPPTPPPTPPP 444
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 230 GGGXPKKKXXFXXPXKKXGGGXPPPXXPPKXPPXXPP 340
G G + + P + PPP PP PP PP
Sbjct: 849 GRGRGRSRYRRPRPRPRRPPPPPPPPPPPPPPPPPPP 885
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 284 GGGXPPPXXPPKXPPXXPP 340
G PPP PP PP PP
Sbjct: 461 GQAPPPPPPPPPPPPPPPP 479
>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
Length = 264
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 296 PPPXXPPKXPPXXPPXXK 349
PPP PP PP PP K
Sbjct: 79 PPPPPPPPPPPPPPPGAK 96
>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
Length = 465
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 296 PPPXXPPKXPPXXPPXXK 349
PPP PP PP PP K
Sbjct: 280 PPPPPPPPPPPPPPPGAK 297
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,200,179
Number of Sequences: 59808
Number of extensions: 205314
Number of successful extensions: 836
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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