Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O07
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 33 0.27
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 33 0.27
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.63
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.63
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.63
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 3.4
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 3.4
U13070-20|AAN63418.1| 641|Caenorhabditis elegans Hypothetical p... 29 4.5
U13070-18|AAC46635.2| 646|Caenorhabditis elegans Hypothetical p... 29 4.5
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 5.9
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 5.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 5.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 5.9
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 33.1 bits (72), Expect = 0.27
Identities = 26/80 (32%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Frame = -2
Query: 513 FXGXXGGGXXPPXXXXFFXXP-GXF*KXXGPPP--GXKXFXXXKXXKXGXPPXXXKKXFX 343
F G G G PP F P G F GPPP G G PP
Sbjct: 124 FGGPGGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGP 183
Query: 342 XGGKXGGXXGGXXGGGXPPP 283
G G G G G PPP
Sbjct: 184 PGHGGQGGPPGHGGMGGPPP 203
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Frame = -3
Query: 386 GXGGPPPXXX-----KXXXFXGXKXGAXXGXPGGGGXPPP---XFXXGXXKXFFFLGXPP 231
G GGPPP + F G+ G PGG G PPP F F PP
Sbjct: 97 GLGGPPPGMPGGVPPQAQPF-NPHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVPTGPP 155
Query: 230 PXXXXG 213
P G
Sbjct: 156 PLMGGG 161
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = -3
Query: 497 GGGXXPPGXXXFFXXPGXFKXXGXPPP-GKKXXXXXKXGXGGPPP 366
GGG P G P G PP G + G GGPPP
Sbjct: 159 GGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPP 203
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 33.1 bits (72), Expect = 0.27
Identities = 26/80 (32%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Frame = -2
Query: 513 FXGXXGGGXXPPXXXXFFXXP-GXF*KXXGPPP--GXKXFXXXKXXKXGXPPXXXKKXFX 343
F G G G PP F P G F GPPP G G PP
Sbjct: 404 FGGPGGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGP 463
Query: 342 XGGKXGGXXGGXXGGGXPPP 283
G G G G G PPP
Sbjct: 464 PGHGGQGGPPGHGGMGGPPP 483
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Frame = -3
Query: 386 GXGGPPPXXX-----KXXXFXGXKXGAXXGXPGGGGXPPP---XFXXGXXKXFFFLGXPP 231
G GGPPP + F G+ G PGG G PPP F F PP
Sbjct: 377 GLGGPPPGMPGGVPPQAQPF-NPHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVPTGPP 435
Query: 230 PXXXXG 213
P G
Sbjct: 436 PLMGGG 441
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = -3
Query: 497 GGGXXPPGXXXFFXXPGXFKXXGXPPP-GKKXXXXXKXGXGGPPP 366
GGG P G P G PP G + G GGPPP
Sbjct: 439 GGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPP 483
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.63
Identities = 27/96 (28%), Positives = 27/96 (28%)
Frame = -3
Query: 500 GGGGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXGXGGPPPXXXKXXXFXGXKXGA 321
GG PP PG G PPP G PPP
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Query: 320 XXGXPGGGGXPPPXFXXGXXKXFFFLGXPPPXXXXG 213
PGG PPP G F G PPP G
Sbjct: 761 PPPPPGGCPPPPPPPPPGG-----FKGGPPPPPPPG 791
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/65 (33%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Frame = +2
Query: 191 PPPXXXXXXXXXXGGGXPKKKXXFXXPXKKXGGGXPPPXXPPKX--PPXXPPXXKXFFXX 364
PPP GG P P GG PPP PP PP PP F
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPP--ISGGPPPPPPPPGGCPPPPPPPPPGGF--- 780
Query: 365 XGGXP 379
GG P
Sbjct: 781 KGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.63
Identities = 27/96 (28%), Positives = 27/96 (28%)
Frame = -3
Query: 500 GGGGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXGXGGPPPXXXKXXXFXGXKXGA 321
GG PP PG G PPP G PPP
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Query: 320 XXGXPGGGGXPPPXFXXGXXKXFFFLGXPPPXXXXG 213
PGG PPP G F G PPP G
Sbjct: 761 PPPPPGGCPPPPPPPPPGG-----FKGGPPPPPPPG 791
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/65 (33%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Frame = +2
Query: 191 PPPXXXXXXXXXXGGGXPKKKXXFXXPXKKXGGGXPPPXXPPKX--PPXXPPXXKXFFXX 364
PPP GG P P GG PPP PP PP PP F
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPP--ISGGPPPPPPPPGGCPPPPPPPPPGGF--- 780
Query: 365 XGGXP 379
GG P
Sbjct: 781 KGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.63
Identities = 27/96 (28%), Positives = 27/96 (28%)
Frame = -3
Query: 500 GGGGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXGXGGPPPXXXKXXXFXGXKXGA 321
GG PP PG G PPP G PPP
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
Query: 320 XXGXPGGGGXPPPXFXXGXXKXFFFLGXPPPXXXXG 213
PGG PPP G F G PPP G
Sbjct: 344 PPPPPGGCPPPPPPPPPGG-----FKGGPPPPPPPG 374
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/65 (33%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Frame = +2
Query: 191 PPPXXXXXXXXXXGGGXPKKKXXFXXPXKKXGGGXPPPXXPPKX--PPXXPPXXKXFFXX 364
PPP GG P P GG PPP PP PP PP F
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPP--ISGGPPPPPPPPGGCPPPPPPPPPGGF--- 363
Query: 365 XGGXP 379
GG P
Sbjct: 364 KGGPP 368
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 278 KXGGGXPPPXXPPKXPPXXPP 340
+ GG PPP PP+ P PP
Sbjct: 132 RAGGSSPPPPPPPRVPRTPPP 152
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 269 PXKKXGGGXPPPXXPPKXPPXXPP 340
P K GG PP PP P PP
Sbjct: 128 PRKSRAGGSSPPPPPPPRVPRTPP 151
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = -3
Query: 374 PPPXXXKXXXFXGXKXGAXXGXPGGGGXPPPXFXXGXXKXFFFLGXPPPXXXXG 213
PPP + + A G PGGG PPP G ++ G PPP G
Sbjct: 652 PPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPP-PQGQQ---YYGGPPPPGQPYG 701
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = -3
Query: 374 PPPXXXKXXXFXGXKXGAXXGXPGGGGXPPPXFXXGXXKXFFFLGXPPPXXXXG 213
PPP + + A G PGGG PPP G ++ G PPP G
Sbjct: 652 PPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPP-PQGQQ---YYGGPPPPGQPYG 701
>U13070-20|AAN63418.1| 641|Caenorhabditis elegans Hypothetical
protein F01F1.1c protein.
Length = 641
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 409 FXPGGGXPXLLKXPGXXKKXXXPGGXXPPPP 501
F P GG P L G + PG PPPP
Sbjct: 159 FVPQGGGPQPLMGVGRGRGVPAPGPAKPPPP 189
>U13070-18|AAC46635.2| 646|Caenorhabditis elegans Hypothetical
protein F01F1.1a protein.
Length = 646
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 409 FXPGGGXPXLLKXPGXXKKXXXPGGXXPPPP 501
F P GG P L G + PG PPPP
Sbjct: 164 FVPQGGGPQPLMGVGRGRGVPAPGPAKPPPP 194
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = -3
Query: 425 PPPGKKXXXXXKXGXGGPPPXXXKXXXFXGXKXGAXXGXPGGGGXPPP 282
PPP G GG P G G G PGG G PPP
Sbjct: 392 PPPSAFGAPQGPGGPGGYGPPPPGGPGAPG-SYGPPQGGPGGFGPPPP 438
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Frame = -3
Query: 380 GGPPPXXXKXXXFXGXKXGAXXGXP--GGGGXPPPXFXXGXXKXFFFLGXPPP 228
G PPP F G G P G G PPP F G PPP
Sbjct: 319 GAPPPQGAPQQGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSF--GGPPP 369
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Frame = +1
Query: 370 GGPPFPXFXXXKXFXPG--GGXPXLLKXP----GXXKKXXXPGGXXPPPP 501
GGPP P F P G P P G + PGG PPPP
Sbjct: 365 GGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPP 414
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/67 (32%), Positives = 22/67 (32%)
Frame = -3
Query: 494 GGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXGXGGPPPXXXKXXXFXGXKXGAXX 315
GG PG PG G P P G GGP P K GA
Sbjct: 204 GGPGEPGASEQ-GGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGA-D 261
Query: 314 GXPGGGG 294
G PGG G
Sbjct: 262 GNPGGPG 268
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/67 (32%), Positives = 22/67 (32%)
Frame = -3
Query: 494 GGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXGXGGPPPXXXKXXXFXGXKXGAXX 315
GG PG PG G P P G GGP P K GA
Sbjct: 204 GGPGEPGASEQ-GGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGA-D 261
Query: 314 GXPGGGG 294
G PGG G
Sbjct: 262 GNPGGPG 268
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/77 (31%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Frame = -3
Query: 494 GGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXG---XGGPP-PXXXKXXXFXGXKX 327
G P G PG F G PP G G GGPP P G
Sbjct: 213 GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPP 272
Query: 326 GA--XXGXPGGGGXPPP 282
G G P GG P P
Sbjct: 273 GPFDPSGAPPSGGPPGP 289
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/77 (31%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Frame = -3
Query: 494 GGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXG---XGGPP-PXXXKXXXFXGXKX 327
G P G PG F G PP G G GGPP P G
Sbjct: 303 GPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPP 362
Query: 326 GA--XXGXPGGGGXPPP 282
G G P GG P P
Sbjct: 363 GPFDPSGAPPSGGPPGP 379
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/77 (31%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Frame = -3
Query: 494 GGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXG---XGGPP-PXXXKXXXFXGXKX 327
G P G PG F G PP G G GGPP P G
Sbjct: 393 GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPP 452
Query: 326 GA--XXGXPGGGGXPPP 282
G G P GG P P
Sbjct: 453 GPFNPSGAPPSGGPPGP 469
Score = 28.3 bits (60), Expect = 7.8
Identities = 24/77 (31%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Frame = -3
Query: 494 GGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXG---XGGPP-PXXXKXXXFXGXKX 327
G P G PG F G PP G G GGPP P G
Sbjct: 153 GPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPT 212
Query: 326 GA--XXGXPGGGGXPPP 282
G G P GG P P
Sbjct: 213 GPFDPSGAPPSGGPPGP 229
Score = 28.3 bits (60), Expect = 7.8
Identities = 24/77 (31%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Frame = -3
Query: 494 GGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXG---XGGPP-PXXXKXXXFXGXKX 327
G P G PG F G PP G G GGPP P G
Sbjct: 273 GPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPP 332
Query: 326 GA--XXGXPGGGGXPPP 282
G G P GG P P
Sbjct: 333 GPFDPSGAPPSGGPPGP 349
Score = 28.3 bits (60), Expect = 7.8
Identities = 24/77 (31%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Frame = -3
Query: 494 GGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXG---XGGPP-PXXXKXXXFXGXKX 327
G P G PG F G PP G G GGPP P G
Sbjct: 363 GPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPP 422
Query: 326 GA--XXGXPGGGGXPPP 282
G G P GG P P
Sbjct: 423 GPFNPSGAPPSGGPPGP 439
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/67 (32%), Positives = 22/67 (32%)
Frame = -3
Query: 494 GGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXGXGGPPPXXXKXXXFXGXKXGAXX 315
GG PG PG G P P G GGP P K GA
Sbjct: 204 GGPGEPGASEQ-GGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGA-D 261
Query: 314 GXPGGGG 294
G PGG G
Sbjct: 262 GNPGGPG 268
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/67 (32%), Positives = 22/67 (32%)
Frame = -3
Query: 494 GGXXPPGXXXFFXXPGXFKXXGXPPPGKKXXXXXKXGXGGPPPXXXKXXXFXGXKXGAXX 315
GG PG PG G P P G GGP P K GA
Sbjct: 204 GGPGEPGASEQ-GGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGA-D 261
Query: 314 GXPGGGG 294
G PGG G
Sbjct: 262 GNPGGPG 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,322,409
Number of Sequences: 27780
Number of extensions: 246730
Number of successful extensions: 964
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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