Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O07
         (892 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    31   1.0  
At5g19090.2 68418.m02270 heavy-metal-associated domain-containin...    30   1.8  
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin...    30   1.8  
At3g49300.1 68416.m05388 proline-rich family protein contains pr...    29   5.5  
At2g27390.1 68415.m03306 proline-rich family protein contains pr...    28   7.2  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   9.6  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = +2

Query: 194 PPXXXXXXXXXXGGGXPKKKXXFXXPXKKXGGGXPPPXXPPKXPPXXPP 340
           PP          GGG          P    GGG PPP  PP   P  PP
Sbjct: 648 PPRVPRPPPRSAGGGKSTNLPSARPPLP--GGGPPPPPPPPGGGPPPPP 694



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 415 PGGGXPXLLKXPGXXKKXXXPGGXXPPPP 501
           PGGG P     PG        GG  PPPP
Sbjct: 675 PGGGPPPPPPPPGGGPPPPPGGGPPPPPP 703



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 230 GGGXPKKKXXFXXPXKKXGGGXPPPXXPP 316
           GG  P        P    GGG PPP  PP
Sbjct: 677 GGPPPPPPPPGGGPPPPPGGGPPPPPPPP 705



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 269 PXKKXGGGXPPPXXPPKXPPXXPP 340
           P    GGG PPP      PP  PP
Sbjct: 682 PPPPPGGGPPPPPGGGPPPPPPPP 705


>At5g19090.2 68418.m02270 heavy-metal-associated domain-containing
           protein contains Pfam heavy-metal-associated domain
           PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
           isoform contains a non-consensus TG-acceptor splice site
           at intron 3
          Length = 465

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -3

Query: 386 GXGGPPPXXXKXXXFXGXKXGAXXGXPGGGGXPP 285
           G GG P    K     G   G   G  GGGG PP
Sbjct: 108 GGGGGPANNNKGQKIGGGGGGGGGGGGGGGGGPP 141



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -2

Query: 378 GXPPXXXKKXFXXGGKXGGXXGGXXGGGXPPP 283
           G  P    K    GG  GG  GG  GGG  PP
Sbjct: 110 GGGPANNNKGQKIGGGGGGGGGGGGGGGGGPP 141


>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
           protein contains Pfam heavy-metal-associated domain
           PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
           isoform contains a non-consensus TG-acceptor splice site
           at intron 3
          Length = 587

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -3

Query: 386 GXGGPPPXXXKXXXFXGXKXGAXXGXPGGGGXPP 285
           G GG P    K     G   G   G  GGGG PP
Sbjct: 108 GGGGGPANNNKGQKIGGGGGGGGGGGGGGGGGPP 141



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -2

Query: 378 GXPPXXXKKXFXXGGKXGGXXGGXXGGGXPPP 283
           G  P    K    GG  GG  GG  GGG  PP
Sbjct: 110 GGGPANNNKGQKIGGGGGGGGGGGGGGGGGPP 141


>At3g49300.1 68416.m05388 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 86

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 278 KXGGGXPPPXXPPKXPPXXP 337
           K G G PPP  PP  PP  P
Sbjct: 64  KPGYGFPPPPPPPLSPPPPP 83


>At2g27390.1 68415.m03306 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 296 PPPXXPPKXPPXXPP 340
           PPP  PP+ PP  PP
Sbjct: 94  PPPEEPPREPPPPPP 108


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 269 PXKKXGGGXPPPXXPPKXPPXXPPXXK 349
           P KK  G  PPP    K PP  P   K
Sbjct: 414 PGKKGAGPPPPPPMSKKGPPKPPGNPK 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,577,754
Number of Sequences: 28952
Number of extensions: 185856
Number of successful extensions: 1048
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)