Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O06
         (938 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    50   1e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    39   0.21 
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    38   0.37 
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    38   0.37 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    33   7.9  

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 49.6 bits (113), Expect = 1e-04
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +2

Query: 359 SALMNRPTXGERRFAYWALFXXLAH 433
           +ALMNRPT GERRFAYWALF  LAH
Sbjct: 25  AALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 38.7 bits (86), Expect = 0.21
 Identities = 19/33 (57%), Positives = 21/33 (63%)
 Frame = +1

Query: 568 KPXXRPRXWRFSIXSAPLTNITKLDXXVXXGET 666
           K   RPR  RFSI SAPLT+I K D  +  GET
Sbjct: 74  KEEIRPRRSRFSIGSAPLTSIAKSDAQISGGET 106


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 37.9 bits (84), Expect = 0.37
 Identities = 22/44 (50%), Positives = 26/44 (59%)
 Frame = +1

Query: 586 RXWRFSIXSAPLTNITKLDXXVXXGETXTGXXRXHPVXPXQAPS 717
           R  RFSI SAPLT+ITK+D  V  GET     +     P +APS
Sbjct: 12  RRCRFSIGSAPLTSITKIDAQVRGGETRQ-DYKDTRRFPLEAPS 54


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 37.9 bits (84), Expect = 0.37
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +1

Query: 583 PRXWRFSIXSAPLTNITKLDXXVXXGET 666
           PR  RFSI SAPLT+ITK D  +  GET
Sbjct: 47  PRQSRFSIGSAPLTSITKSDAQISGGET 74


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 33.5 bits (73), Expect = 7.9
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = -1

Query: 413 APNTQXASPRXLGDSLMQ 360
           APNTQ ASPR L DSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,970,090
Number of Sequences: 1657284
Number of extensions: 4882558
Number of successful extensions: 4386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4384
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86141029997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)